View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_1 (Length: 608)
Name: NF15917_low_1
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 240 - 591
Target Start/End: Original strand, 11624964 - 11625309
Alignment:
| Q |
240 |
aagtttcttcatctatggaaggtgtttttgggttctgaataccctccggtaatgttgctgctgaattgttgttgttcttgatctctgcggcatccggtgg |
339 |
Q |
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| T |
11624964 |
aagtttcttcatctatggaaggtgtttttgggtt------accctccggtaatgttgctgctgaattgttgttgttcttgatctctgctgcatctggtgg |
11625057 |
T |
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| Q |
340 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagacac |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625058 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagacat |
11625157 |
T |
|
| Q |
440 |
ggcaccaacactaacatgtcgacaccactaattatttgagacaacataa-tgatttaatgtaactattgtatgt-gtcactgtagtgccggtgtcagaca |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| | | | ||||||| |
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| T |
11625158 |
ggcaccaacactaacatgtcgacaccactaattatttgagacaacataagtgatttaatgtaactattgtatgtcgacac--cactaattatatcagaca |
11625255 |
T |
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| Q |
538 |
cctaacatgtttccaaatctgaagtattagtcctgcatatccaagagcataaat |
591 |
Q |
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| T |
11625256 |
cctaacatgtttccaaatctgaagtattagtcctgcatatccaagagcataaat |
11625309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 11624725 - 11624891
Alignment:
| Q |
1 |
ttttcttcttcctgcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttg |
100 |
Q |
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| T |
11624725 |
ttttcttcttcctgcacccaccggaacatttctcatggttccacctgcagtccaatatctttgacacgccttgcagaaatagcgcggctgattgacgttg |
11624824 |
T |
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| Q |
101 |
taattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctg |
167 |
Q |
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| T |
11624825 |
taattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctg |
11624891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
23 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
122 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
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| Q |
123 |
ttgtgtcc |
130 |
Q |
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| |||||| |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
14 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
113 |
Q |
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||||| ||||| || |||||||||||||| || |||||||||||||| || || |||||| |||| || || || ||||| ||||||||||| |||| |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
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| Q |
114 |
aacagaactttgtgtcc |
130 |
Q |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
36 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
135 |
Q |
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||||||| || |||||||||||||| ||||| ||||| || | || ||||| ||| |||||||||||||||||||||| || |||||||| |||| |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
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| Q |
136 |
gttgcagcgtggaca |
150 |
Q |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
86 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
130 |
Q |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
26 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
125 |
Q |
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||||||||||||| ||| || |||||||| ||||| || || ||||||||||| ||| || || || || ||||| ||||||||||| ||||| || | |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
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| Q |
126 |
tgtcc |
130 |
Q |
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||||| |
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| T |
3775600 |
tgtcc |
3775596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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