View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_11 (Length: 252)
Name: NF15917_low_11
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 1461034 - 1460812
Alignment:
| Q |
19 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
118 |
Q |
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| T |
1461034 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
1460935 |
T |
|
| Q |
119 |
cattttgatcgtttcggccatggtaattacatcgcttgtccattatacttgggaagtcatctctactgaagacattgtattctcaaagggaatacaaaaa |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460934 |
cattttgatcgtttcggccatggtaattgcatcgcttgtccatgatacttgggaagtcatctctactgaagacattgtattctcaaagggaatacaaaaa |
1460835 |
T |
|
| Q |
219 |
ttcgtatcagttatctgtttctt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
1460834 |
ttcgtatcagttatctgtttctt |
1460812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 1555928 - 1556150
Alignment:
| Q |
19 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555928 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
1556027 |
T |
|
| Q |
119 |
cattttgatcgtttcggccatggtaattacatcgcttgtccattatacttgggaagtcatctctactgaagacattgtattctcaaagggaatacaaaaa |
218 |
Q |
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| T |
1556028 |
cattttgatcgtttcggccatggtaattgcatcgcttgtccatgatacttgggaagtcatctctactgaagacattgtattctcaaagggaatacaaaaa |
1556127 |
T |
|
| Q |
219 |
ttcgtatcagttatctgtttctt |
241 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1556128 |
ttcgtatcagttatctgtttctt |
1556150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 1455925 - 1455703
Alignment:
| Q |
19 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
1455925 |
ctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagcat |
1455826 |
T |
|
| Q |
119 |
cattttgatcgtttcggccatggtaattacatcgcttgtccattatacttgggaagtcatctctactgaagacattgtattctcaaagggaatacaaaaa |
218 |
Q |
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||||||||||| ||||||||| ||| || || ||||||||| | ||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
1455825 |
cattttgatcgcttcggccatagtatttgcaccgcttgtccgtgataattgggaattcatctctactgaagatattgtattctcaaaaggaatacaaaaa |
1455726 |
T |
|
| Q |
219 |
ttcgtatcagttatctgtttctt |
241 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
1455725 |
ttcatatcagttatctgtttctt |
1455703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 1567420 - 1567642
Alignment:
| Q |
19 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
1567420 |
ctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagcat |
1567519 |
T |
|
| Q |
119 |
cattttgatcgtttcggccatggtaattacatcgcttgtccattatacttgggaagtcatctctactgaagacattgtattctcaaagggaatacaaaaa |
218 |
Q |
| |
|
||||||||||| ||| ||||| ||| || || ||||||||| | ||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
1567520 |
cattttgatcgcttcagccatagtatttgcaccgcttgtccgtgataattgggaattcatctctactgaagatattgtattctcaaaaggaatacaaaaa |
1567619 |
T |
|
| Q |
219 |
ttcgtatcagttatctgtttctt |
241 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
1567620 |
ttcatatcagttatctgtttctt |
1567642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 1454407 - 1454287
Alignment:
| Q |
19 |
ctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcat |
118 |
Q |
| |
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||||||||||| | ||||||||||||||||||| || || ||| | |||| |||||||| |||||||| || ||||||||||||| | ||||||||| |
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| T |
1454407 |
ctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagcat |
1454308 |
T |
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| Q |
119 |
cattttgatcgtttcggccat |
139 |
Q |
| |
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| |||||||| ||| |||||| |
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| T |
1454307 |
ctttttgatcttttgggccat |
1454287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2164326 - 2164278
Alignment:
| Q |
25 |
acaacagaatctttgggatcttattcataattttgctatcaaatgcaat |
73 |
Q |
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||||||| ||||||||| |||||||||||||| ||||||||| |||||| |
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| T |
2164326 |
acaacagcatctttggggtcttattcataattctgctatcaactgcaat |
2164278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 1750172 - 1750087
Alignment:
| Q |
34 |
tctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagcatc |
119 |
Q |
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||||||||||||||||| || || ||||||| ||||| |||| ||||||||||| ||| ||| |||||||| ||||||| |||| |
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| T |
1750172 |
tctttgggatcttattcttacttgaactatcaagtgcaacttcaatcgtagaagttagttatttatcatggactgctgctatcatc |
1750087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 1754212 - 1754131
Alignment:
| Q |
33 |
atctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgcta |
114 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||||||| | |||||| ||||| | ||||||| ||||||| |
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| T |
1754212 |
atctttgggatcttattcatacttggactatcaagtgcaatttcagtcatggaagttagttttgtatcatggattgctgcta |
1754131 |
T |
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Back To:
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