View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_17 (Length: 202)
Name: NF15917_low_17
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 42788591 - 42788760
Alignment:
| Q |
17 |
agactcatacacttcgggtgaatcttttcttacatattttcggatattaacaaattaaacaaagaatatatcaaaatggccataaccattt--nnnnnnn |
114 |
Q |
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| T |
42788591 |
agactcatacacttcgggtgaatcttttgttacatattttcggatattaacaaattaaacaaagaatatatcaaaatggtcataaccatttaaaaaaaaa |
42788690 |
T |
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| Q |
115 |
nnccatgaatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtcc |
184 |
Q |
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| T |
42788691 |
aactatgaatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtcc |
42788760 |
T |
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Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 42798128 - 42798298
Alignment:
| Q |
17 |
agactcatacacttcgggtgaatcttttcttacatattttcggatattaacaaattaaacaaagaatatatcaaaatggccataaccattt---nnnnnn |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42798128 |
agactcatacacttcgggtgaatcttttgttacatattttcggatattaacaaattaaacaaagaatatatcaaaatggtcataaccatttaaaaaaaaa |
42798227 |
T |
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| Q |
114 |
nnnccatgaatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtcc |
184 |
Q |
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| T |
42798228 |
aactaatgaatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtcc |
42798298 |
T |
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