View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_3 (Length: 502)
Name: NF15917_low_3
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 30230918 - 30230671
Alignment:
| Q |
1 |
tttgcaatagcaaatgcgtcatcattcaactcgatgtcttcgctgaacattctgctaaattttaataatttcaaaagtgggcaactctcgccaatggctt |
100 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||| |
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| T |
30230918 |
tttgcaatagcaaaagcgtcatcattcagctcgatgtctttgctgaacattctgctaaattttattgatttcaaaagtgggcaactccgaccaatgactt |
30230819 |
T |
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| Q |
101 |
caagggaatccttacataggttgctaaatgaaatgtccagctcctctagcaatggaaatttgtttgcaacttcactaatttgtttgtgaagaatatttcg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
30230818 |
caagagaatccttacataggttgctaaatgaaatgtccagctcctctagcagtggaaatttgtttgcaacttcactaaattgtttgtgtaaaatatttcg |
30230719 |
T |
|
| Q |
201 |
gcattttgtaagttgtaggcgtcgtaggtgacttccactataagattt |
248 |
Q |
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| T |
30230718 |
gcattttgtaagttggatgcgtcgtaggtgacttccactgtaagattt |
30230671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 30223922 - 30223675
Alignment:
| Q |
1 |
tttgcaatagcaaatgcgtcatcattcaactcgatgtcttcgctgaacattctgctaaattttaataatttcaaaagtgggcaactctcgccaatggctt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |
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| T |
30223922 |
tttgcaatagcaaaagcgtcatcattcaactcgatgtctttactgaacattctgctaaattttaatgatttcaaaagtgggcaactccgaccaatgactt |
30223823 |
T |
|
| Q |
101 |
caagggaatccttacataggttgctaaatgaaatgtccagctcctctagcaatggaaatttgtttgcaacttcactaatttgtttgtgaagaatatttcg |
200 |
Q |
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| T |
30223822 |
caagagaatccttacataggttgctaaatgaaatgtcaagctcctctagcagtggaaatttgattgcaacttcactaatttgtttgtgcaaaatatttcg |
30223723 |
T |
|
| Q |
201 |
gcattttgtaagttgtaggcgtcgtaggtgacttccactataagattt |
248 |
Q |
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||||||||||||||| | | ||||||||||||||||||| |||||||| |
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| T |
30223722 |
gcattttgtaagttgcatgtgtcgtaggtgacttccactgtaagattt |
30223675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 30203070 - 30202823
Alignment:
| Q |
1 |
tttgcaatagcaaatgcgtcatcattcaactcgatgtcttcgctgaacattctgctaaattttaataatttcaaaagtgggcaactctcgccaatggctt |
100 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| || |||||| ||||||||||||| | || |||||||||| |||||| |||||| ||| |
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| T |
30203070 |
tttgcaatagcaattgcgtcatcattcaactcaatgtctttgcagaacatcctgctaaattttagtgatatcaaaagtggacaactccgaccaatgactt |
30202971 |
T |
|
| Q |
101 |
caagggaatccttacataggttgctaaatgaaatgtccagctcctctagcaatggaaatttgtttgcaacttcactaatttgtttgtgaagaatatttcg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||| |||| |||| ||||||||| |
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| T |
30202970 |
caagagaatccttacataggttgctaaatgaaatgtcaagctcctctagcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcg |
30202871 |
T |
|
| Q |
201 |
gcattttgtaagttgtaggcgtcgtaggtgacttccactataagattt |
248 |
Q |
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|||||| ||||| |||| ||| ||||| ||||||||||| |||||||| |
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| T |
30202870 |
gcatttcgtaagctgtatgcgacgtagttgacttccactgtaagattt |
30202823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 484
Target Start/End: Complemental strand, 30202726 - 30202592
Alignment:
| Q |
345 |
caagttcttcatttgaaaaggatgcataaaatattgagaaaaggatgtaccaaaagaaagattgagttcttggttcggatgcatacatgctatgaagtta |
444 |
Q |
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||||||| |||||| ||||||||| || |||||||| ||| ||||||||||||| |||||||| | || | ||||||||||||||| ||||| |
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| T |
30202726 |
caagttcctcatttcaaaaggatgtatcaaatattggataaaagatgtaccaaaagcaagattgattcct-----caaatgcatacatgctatttagtta |
30202632 |
T |
|
| Q |
445 |
aataaaataaaaatgaaacacaccacaaatcatgaccaat |
484 |
Q |
| |
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||||||| |||||||||||||| ||| |||||||||||| |
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| T |
30202631 |
aataaaacaaaaatgaaacacattacatatcatgaccaat |
30202592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 30223560 - 30223479
Alignment:
| Q |
366 |
atgcataaaatattgagaaaaggatgtaccaaaagaaagattgagttcttggttcggatgcatacatgctatgaagttaaat |
447 |
Q |
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||||| |||||||||| |||| ||||| |||| |||||||| |||||| |||||||||||||||||||||| | ||||||| |
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| T |
30223560 |
atgcaaaaaatattgaaaaaaagatgtcgcaaaggaaagattcagttctcggttcggatgcatacatgctattatgttaaat |
30223479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 16644131 - 16644257
Alignment:
| Q |
50 |
ttctgctaaattttaataatttcaaaagtgggcaactctcgccaatggcttcaagggaatccttacataggttgctaaatgaaatgtccagctcctctag |
149 |
Q |
| |
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||||||||||||||| | |||||| ||| |||||| |||||| |||||| ||||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
16644131 |
ttctgctaaattttagtgatttcagaagagggcaaaaacgaccaatgaattcaagagaatccttagatatgttgctaaatgaaatgtcaagctcctctaa |
16644230 |
T |
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| Q |
150 |
caatggaaatttgtttgcaacttcact |
176 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
16644231 |
cagtggaaatttgtttgcaacttcact |
16644257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 17618492 - 17618618
Alignment:
| Q |
50 |
ttctgctaaattttaataatttcaaaagtgggcaactctcgccaatggcttcaagggaatccttacataggttgctaaatgaaatgtccagctcctctag |
149 |
Q |
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||||||||||||||| | |||||| ||| |||||| |||||| |||||| ||||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
17618492 |
ttctgctaaattttagtgatttcagaagagggcaaaaacgaccaatgaattcaagagaatccttagatatgttgctaaatgaaatgtcaagctcctctaa |
17618591 |
T |
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| Q |
150 |
caatggaaatttgtttgcaacttcact |
176 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
17618592 |
cagtggaaatttgtttgcaacttcact |
17618618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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