View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_5 (Length: 373)
Name: NF15917_low_5
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 203 - 364
Target Start/End: Complemental strand, 47201548 - 47201387
Alignment:
| Q |
203 |
caggttgggttggcaccactttgggatgatgggtatgggaatcgcactgttgaagattactttgctgcatccaaagagatttgcaagtttgatggtggcc |
302 |
Q |
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| T |
47201548 |
caggttgggttggcaccactttgggatgatgggtatgggaatcgcactgttgaagattactttgctgcatccaaagagatttgcaagtttgatggtggcc |
47201449 |
T |
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| Q |
303 |
caccacgttggttttgcccaatcgaatgtgcttctcctttccaaggttctcccacccctatg |
364 |
Q |
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| T |
47201448 |
caccacgttggttttgcccaatcgaatgtgcttctcctttccaaggttctcccacccttatg |
47201387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 47201756 - 47201579
Alignment:
| Q |
1 |
atattctcaaagaagatatcttcaacctcgtaaatttcaagttcatcaatcacgtagcttagatatattgtcatctgaatctgatccattaaacggaact |
100 |
Q |
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| T |
47201756 |
atattctcaaagaagatatcttcaacctcgtaaatttcaagttcatcaatcacgtagcttagatatattgtcatctgaatctgatccattaaacggaact |
47201657 |
T |
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| Q |
101 |
tcttc------ttctgttgttgttgaaacaaaccaaaacaaggttcctcttttattgcgttctactaataatgttgtt |
172 |
Q |
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| T |
47201656 |
tcttcttcttcttctgttgttgttgaaacaaaccaaaacaaggttcctcttttattgcgttctactaataatgttgtt |
47201579 |
T |
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