View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_6 (Length: 368)
Name: NF15917_low_6
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 37 - 353
Target Start/End: Original strand, 9932852 - 9933168
Alignment:
| Q |
37 |
cttagagacctcaaatcaaaaccataggtggatgatcacttaaccactattgatatgaacattaatggcaacaagaaagataaccataaagccaaagaag |
136 |
Q |
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| T |
9932852 |
cttagagacctcaaatcaaaaccataggtggatgatcacttaaccactattgatatgaacattaatggcaacaagaaagataaccataaagccaaagaag |
9932951 |
T |
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| Q |
137 |
agaagagaatgaacaaaaatggaaatggcacttgtttggaaattgacaaattccaccaccctgcctttgccaggtagctgaaatagtaatccaggtgaaa |
236 |
Q |
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| T |
9932952 |
agaagggaatgaacaaaaatggaaatggcacttgtttggaaattaacaaattccaccaccctgcctttgccaggtagctgaaatagtaatccaggtgaaa |
9933051 |
T |
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| Q |
237 |
ataacacaaacaagatcaagcctataacaattggagcccaatctgccatttatttctccctttaaagctttctatgataactagtgagagataaaaattg |
336 |
Q |
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| T |
9933052 |
ataacacaaacaagatcaagcctataacaattggagcccaatctgccatttatttctccctttgaagctttctatgataactagtgagagataaaaatta |
9933151 |
T |
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| Q |
337 |
taaagaaaaatgtaaca |
353 |
Q |
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| T |
9933152 |
taaagaaaaatgtaaca |
9933168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 39 - 353
Target Start/End: Original strand, 9937816 - 9938133
Alignment:
| Q |
39 |
tagagacctcaaatcaaaaccataggtggatgatcacttaaccactattgatatgaacattaatggcaacaagaaagataaccataaagccaaagaagag |
138 |
Q |
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|||||||| |||||||||||||| |||| | ||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
9937816 |
tagagaccacaaatcaaaaccatgggtgaacgatcacttaaccactgtagatatgaacatcaatggcaacaataaagataaccataaatccaaagaagag |
9937915 |
T |
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| Q |
139 |
aagagaatgaacaaaaatggaaatggcacttgtttggaaattgacaaattccaccaccctgcctttgccaggtagctgaaatagtaatccaggtgaaaat |
238 |
Q |
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| T |
9937916 |
aagggaatgaacaaaaatggaaatagcacttgtttggaaattgacaaattccaccaccctgcctttgcctggtagctgaaatagtaatccaggtgaaaat |
9938015 |
T |
|
| Q |
239 |
aacacaaacaagatcaagcctataacaattggagcccaatctgccatttatttctccctttaaagctttctatgataact---agtgagagataaaaatt |
335 |
Q |
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| T |
9938016 |
aacacaaacaagatcaagcctataacaattggagcccaatctgccatttatttctcctattggagcgttctatgttaactagcagtgagagataaaaatg |
9938115 |
T |
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| Q |
336 |
gtaaagaaaaatgtaaca |
353 |
Q |
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|||||||||||||||||| |
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| T |
9938116 |
gtaaagaaaaatgtaaca |
9938133 |
T |
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