View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15917_low_7 (Length: 325)
Name: NF15917_low_7
Description: NF15917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15917_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39985136 - 39985441
Alignment:
| Q |
1 |
caataatcatgcaaacgctgatgaatttcctctacctgcatgcatatttgtaattaataacgctttttcaaaaaattatatgtatatccaaaaatgattg |
100 |
Q |
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| T |
39985136 |
caataatcatgcaaacgctgatgaatttcctctacc---atgcatatttgtaattaacaacgctttttcaaaaaattatatgtatatccaaaaatgattg |
39985232 |
T |
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| Q |
101 |
tatgttatgattatgatattatgcagtactttccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttt |
200 |
Q |
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| T |
39985233 |
tatgttatgattatgatattatgcagtactttccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttt |
39985332 |
T |
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| Q |
201 |
tacttgtggggctgggaataggggctaccccaatgataagtatactaaaggacatggtcaataatttcaaggcaatggaagaggaagatgggtttgcaat |
300 |
Q |
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| T |
39985333 |
tacttgtggggctgggaataggggctaccccaatgataagtatactaaaggacatggtcaataatttcaaggcaatggaagaggaagatgggtttgcaat |
39985432 |
T |
|
| Q |
301 |
ggaggaagg |
309 |
Q |
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| T |
39985433 |
ggaggaagg |
39985441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 120 - 282
Target Start/End: Original strand, 44917579 - 44917741
Alignment:
| Q |
120 |
tatgcagtactttccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaat |
219 |
Q |
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| T |
44917579 |
tatgcagtactctccctaaagttttgatcgatggtccttatggagcgcctgcacaagactacaagcaatatgatgtagttttacttgtaggcctaggaat |
44917678 |
T |
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| Q |
220 |
aggggctaccccaatgataagtatactaaaggacatggtcaataatttcaaggcaatggaaga |
282 |
Q |
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| T |
44917679 |
tggggctaccccaatgataagtatactaaaggacattgtgaataatttcaaggctatggaaga |
44917741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 44892185 - 44892338
Alignment:
| Q |
132 |
tccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaataggggctacccc |
231 |
Q |
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|||||||||||||| |||| ||||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
44892185 |
tccctaaagttttggttgacggtccttatggagcgcctgcacaagactacaaaaaatatgaggtggttttacttgtgggactgggaattggggctacccc |
44892284 |
T |
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| Q |
232 |
aatgataagtatactaaaggacatggtcaataatttcaaggcaatggaagagga |
285 |
Q |
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| T |
44892285 |
aatgataagtatagtaaaggacatattgaataatatcaaggccaaggaagagga |
44892338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 44900831 - 44900982
Alignment:
| Q |
122 |
tgcagtactttccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaatag |
221 |
Q |
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||||||||| |||||||||| |||||| ||||| ||||||||||| ||||| ||||||| | |||| ||||||||||||||||| || |||||||| | |
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| T |
44900831 |
tgcagtactcgccctaaagttcggattgacggtccttatggagcgcctgcacaggactacaagcagtacgaggtggttttacttgttggcctgggaattg |
44900930 |
T |
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| Q |
222 |
gggctaccccaatgataagtatactaaaggacatggtcaataatttcaaggc |
273 |
Q |
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||||||||||||||||||||||| |||||||||| | ||||||| |||||| |
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| T |
44900931 |
gggctaccccaatgataagtataataaaggacattttgaataattccaaggc |
44900982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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