View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15918_high_12 (Length: 210)
Name: NF15918_high_12
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 13655959 - 13656126
Alignment:
| Q |
19 |
taggtatcattgcggcaatgtaatatgcggatatatagaaaatataaagaaatcctaactaatcataactaaaaatatgttttatactcttttttaattt |
118 |
Q |
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| T |
13655959 |
taggtatcattgccgcaatgtaatatgcggatatatagaaaatataaagaaatcctaactaatcataactaaaaatatgttttatacccttt-----ttt |
13656053 |
T |
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| Q |
119 |
ctaactaaaaatatggttacaatttgttttcttctatatttggattctttctttcatgataacaagataaatg |
191 |
Q |
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| T |
13656054 |
ctaactaaaaatatggttacaatttgttttcttctatatttggactctttctttcatgataacaagataaatg |
13656126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 13650095 - 13650171
Alignment:
| Q |
116 |
tttctaactaaaaa-tatggttacaatttgttttcttctatatttggattctttctttcatgataacaagataaatg |
191 |
Q |
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| T |
13650095 |
tttctaactaaaaactatcattacaatttgttttctcctatatttggattcattatgtcatgttaataagataaatg |
13650171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 13656163 - 13656222
Alignment:
| Q |
116 |
tttctaactaaaaatatggttacaatttgttttcttctatatttggattctttctttcat |
175 |
Q |
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| T |
13656163 |
tttcaaactaaaaatatggttaaaatttgtgttttcctatatttggattctttctgtcat |
13656222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 13650205 - 13650255
Alignment:
| Q |
125 |
aaaaatatggttacaatttgttttcttctatatttggattctttctttcat |
175 |
Q |
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| T |
13650205 |
aaaaatatggttacaatttgttttctcctgtatttagattctttctgtcat |
13650255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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