View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15918_high_8 (Length: 317)
Name: NF15918_high_8
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 30801549 - 30801810
Alignment:
| Q |
13 |
agatgaaccttttcagttgcatagttgaaactgctagtaaacatcttgcatggcttggaagggtcattagtacacaagtttttcatgtactcatcaggca |
112 |
Q |
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| T |
30801549 |
agatgaaccttttcagttgcatagttgaaactgctagtaaacatcttgcatggcttggaagggtcattagtacacaagtttttcttgtactcatcaggca |
30801648 |
T |
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| Q |
113 |
tatgaaaaatctccttaaaaatgctcattgttttcttcatttgatccattgaaatcccatgattaataacctgtttcaatcccattaattaattaggcct |
212 |
Q |
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| T |
30801649 |
tatgaaaaatctccttaaaaatactcattgtttccttcatttgatccattgaaatcccatgattaataacctgtttcaatcccattaattaattaggccg |
30801748 |
T |
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| Q |
213 |
ctaaactaattttaatgttcactttaaacttctgaatacattcgaccaacgaagaaccaaac |
274 |
Q |
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| T |
30801749 |
ctaaactaattttaatgttcactttaaacttctgaatacattcgaccaacgaagaaccaaac |
30801810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 30809019 - 30809163
Alignment:
| Q |
13 |
agatgaaccttttcagttgcatagttgaaactgctagtaaacatcttgcatggcttggaagggtcattagtacacaagtttttcatgtactcatcaggca |
112 |
Q |
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||||||||||||||| | ||||||||| ||| |||||||||||||| ||||| || ||||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
30809019 |
agatgaaccttttcactgtcatagttgatactactagtaaacatcttacatggttttgaagggtcattagaacacaaacttttcttgtactcatcaggca |
30809118 |
T |
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| Q |
113 |
tatgaaaaatctccttaaaaatgctcattgttttcttcatttgat |
157 |
Q |
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| T |
30809119 |
tatgaaacacctccttaaaaacattcattgtttctttcatttgat |
30809163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 30784094 - 30784272
Alignment:
| Q |
15 |
atgaaccttttcagttgcatagttgaaactgctagtaaacatcttgcatggcttggaagggtcattagtacacaagtttttcatgtactcatcaggcata |
114 |
Q |
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|||||||||||||||| |||| | | ||||||||||||| || | |||| ||| || ||||||| | ||| ||||| | ||||||||| |||||| |
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| T |
30784094 |
atgaaccttttcagtttcatatctaagactgctagtaaacttcctacatgtcttcaaatcatcattagcatacatgttttgcttgtactcattaggcatc |
30784193 |
T |
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| Q |
115 |
tgaaaaatctccttaaaaatgctcattgttttcttcatttgatccattgaaatcccatgattaataacctgtttcaatc |
193 |
Q |
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| T |
30784194 |
tcaaacacctccttgaaaacactcattgtttctttcatttgattcattgagattccatgattgataacctacttcaatc |
30784272 |
T |
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