View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15918_low_11 (Length: 300)
Name: NF15918_low_11
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 4587460 - 4587647
Alignment:
| Q |
45 |
tattgaataagatgtatttggtttataataaagtttagattcatcacttattaaatgaatctg---aag--nnnnnnnntcttgcttttaatatgactgg |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4587460 |
tattgaataagatgtatttggtttataataaagtttagatacatcacttattaaatgaatctggaaaagaaaaaaaaaatcttgcttttaatatgactgg |
4587559 |
T |
|
| Q |
140 |
ttatatcaaaagttgaagnnnnnnnntaatttaagggtacatttgaaagaataacacttattatattatagttcttcaaaaacacacttattg |
232 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
4587560 |
ttatatcaaaagttgaagaaaaaaaataatttaagggtagatttgaaagaataacact-----tattatagttcttcaaaaaaacacttattg |
4587647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 4587415 - 4587445
Alignment:
| Q |
15 |
actttcttccgtcactattataagctaatat |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4587415 |
actttcttccgtcactattataagctaatat |
4587445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 50970607 - 50970648
Alignment:
| Q |
68 |
tataataaagtttagattcatcacttattaaatgaatctgaa |
109 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
50970607 |
tataataaagtttagatacatcaattatttaatgaatctgaa |
50970648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 51073743 - 51073784
Alignment:
| Q |
68 |
tataataaagtttagattcatcacttattaaatgaatctgaa |
109 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
51073743 |
tataataaagtttagatacatcaattatttaatgaatctgaa |
51073784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University