View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15918_low_15 (Length: 240)
Name: NF15918_low_15
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 4587341 - 4587204
Alignment:
| Q |
10 |
tatggatattgtttttctcaattaaatgcagtcaactaacttttttaaaattaaattacttccttgtaagtaggagtattttctgtttcggtcaaaaaat |
109 |
Q |
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| T |
4587341 |
tatgaatattgtttttatcaattaaatgcagtcaactaacttttttaaaattaaattacttccttataagtaggagtattttctgtttcggtcaaaaaat |
4587242 |
T |
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| Q |
110 |
accgaaaaactgaaagcccaaacggtcaatgctatatc |
147 |
Q |
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| T |
4587241 |
accgaaaaactgaaagtcaaaacggtcaatgctatatc |
4587204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 4538455 - 4538358
Alignment:
| Q |
49 |
cttttttaaaattaaattacttccttgtaagtaggagtattttctgtttcggtcaaaaaataccgaaaaactgaaagcccaaacggtcaatgctatat |
146 |
Q |
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| T |
4538455 |
cttttttaaaattaaactacttccttgtaagtaggagtattttctgtttcggttaaaaaataccaaaaaactgaaagcccaaacggtcaatgctatat |
4538358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 4537284 - 4537380
Alignment:
| Q |
50 |
ttttttaaaattaaattacttccttgtaagtaggagtattttctgtttcggtcaaaaaataccgaaaaactgaaagcccaaacggtcaatgctatat |
146 |
Q |
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| T |
4537284 |
tttttttaaattaaactacttccttgtaagtaggagtattttctgtttcggtcaaaaaatacagaaaaactaaaagcttaaacgatcaacgctatat |
4537380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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