View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15918_low_2 (Length: 473)
Name: NF15918_low_2
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 114 - 456
Target Start/End: Complemental strand, 7742465 - 7742126
Alignment:
| Q |
114 |
gcttatttccaccgccgccgcctctttcatcctcttcatcttcatcttcatgcattcgtcgacgacgactcatcgctgcaaaccctagattgaattttaa |
213 |
Q |
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| T |
7742465 |
gcttatttccaccgccgccgcctctttcatcctcttcatcttcat------gcattcgtcgacgacgactcatcgctgcaaaccctagattgaattttaa |
7742372 |
T |
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| Q |
214 |
cgaattttgtttttgttggaagctttacgattggaattggaatatggaagctttacgattggaattttgttcttgaaacgagggtgaaggagaatggtag |
313 |
Q |
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| T |
7742371 |
cgaattttgtttttgttggaagctttacgattggaattggaatatggaagctttacgattggaattttgttcttgaaacgagggtgaaggagaatggtag |
7742272 |
T |
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| Q |
314 |
tggagagtgatcgagagattgaggaagaatagatatagattggaggttaagagttggaatttaaacactctcacttgaaattcttgcatgcaaatgcacc |
413 |
Q |
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| T |
7742271 |
tggagagtgatcgagagattgaggaagaatagatatagattggaggttaagagttggaatttaaacactctcacttgaaattcttgcatgcaaatgcacc |
7742172 |
T |
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| Q |
414 |
taa-atataaagtttt--acacacatcatttatttatgttataaat |
456 |
Q |
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| T |
7742171 |
taacgtataaggttttacacacacatcattaatttatgttataaat |
7742126 |
T |
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