View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15918_low_3 (Length: 472)
Name: NF15918_low_3
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 38957566 - 38958008
Alignment:
| Q |
14 |
catcaccctgattattttcaatcaacctaaccatatcatcaagaaccttctcagaagcaatttccgaaaacactttatcacaattcatagcacaagtctc |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38957566 |
catcaccctgattattctcaatcaacctaaccatatcatcaagaaccttctcagaagcaatttccgaaaacactttatcacaattcatagcacaagtctc |
38957665 |
T |
|
| Q |
114 |
caacaaatcaaggctatgtttctgaacaataggactcttatgattgatctttctcttaatagctttcactatttcagaaccgttaaactcttcggcgtta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38957666 |
caacaaatcaaggctatgtttctgaacaataggactcttatgattgatctttctcttaatagctttcactatttcagaaccgttaaactcttcggcatta |
38957765 |
T |
|
| Q |
214 |
ataaggccgcagattctgagattcataccccaatttggttcagataaagtttcggatgttgcttcgtcgaccattttggattcaggtgttggagtttgga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38957766 |
ataaggccgcagattctgagattcataccccaatttggttcagataaagtttcggatgttgcttcgtcgacaattttggattcaggtgttggagtttgga |
38957865 |
T |
|
| Q |
314 |
gaatttctttcattttgccgcttacgattcgactcatgttggcgctgctggttttgagcctctcgccgaattgagctagctttgatttgtccatggagtg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38957866 |
gaatttctttcattttgccgcttacgattcgactcatgttggcgctgctggttttgagcctctcgccgaattgagctagctttgatttgtccatggagtg |
38957965 |
T |
|
| Q |
414 |
agaaaccctagatcggattcggatggtgtttgttagtgaagat |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38957966 |
agaaaccctagatcggattcggatggtgtttgttagtgaagat |
38958008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 45 - 331
Target Start/End: Complemental strand, 42099724 - 42099439
Alignment:
| Q |
45 |
catatcatcaagaaccttctcagaagcaatttccgaaaacactttatcacaattcatagcacaagtctccaacaaatcaaggctatgtttctgaacaata |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| | |
|
|
| T |
42099724 |
catatcatcaagaaccttctcagaagcaatttcagaaaacactttatcacaattcatagcaacagtttccaacaaatcaagactatgtttctgaacaaca |
42099625 |
T |
|
| Q |
145 |
ggactcttatgattgatctttctcttaatagctttcactatttcagaaccgttaaactcttcggcgttaataaggccgcagattctgagattcatacccc |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||| || || |||||||||||||| |||| |
|
|
| T |
42099624 |
ggactcttatgattaatctttctcttaataactttcacaatttctgaaccgttaaactctttcgcgttaataagaccacaaattctgagattcatgcccc |
42099525 |
T |
|
| Q |
245 |
aatttggttcagataaagtttcggatgttgcttcgtcgaccattttggattcaggtgttggagtttggagaatttctttcattttgc |
331 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
42099524 |
aattt-gttccgataaagtttccgatgttgcttcgtcgaccattttggattcaggtgttggtgtttggagaatttctttcaatttgc |
42099439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University