View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15918_low_4 (Length: 417)
Name: NF15918_low_4
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 4189195 - 4189580
Alignment:
| Q |
18 |
ggtcttgatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189195 |
ggtcttgatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctg |
4189294 |
T |
|
| Q |
118 |
agttagaacctttatttgatagggaagtcatcaaagacccgaatgagcttggtgttacattcacaaatagctggaccgagatcatatccacgattttccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189295 |
agttagaacctttatttgatagggaagtcatcaaagacccgaatgagcttggtgttacattcacaaatagctggaccgagatcatatccacgattttccc |
4189394 |
T |
|
| Q |
218 |
aagcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaagatttg |
317 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189395 |
aagcgaaaaaggaaacgaacatagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaagatttg |
4189494 |
T |
|
| Q |
318 |
aacgagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcatattcaaagccacaaactttatcatcttt |
403 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189495 |
aacaagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcatattcaaagccacaaactttatcatcttt |
4189580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 4192337 - 4192700
Alignment:
| Q |
20 |
tcttgatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctgag |
119 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||| || || |
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| T |
4192337 |
tcttgatggaaaatcttcaaccatgttcatcaaagcttgggcttatttatgcaacaaaacaattgaaaccaatgaagaatcaccaactttgttagctaag |
4192436 |
T |
|
| Q |
120 |
ttagaacctttatttgatagggaagtcatcaaagacccgaatgagcttggtgttacattcacaaatagctggaccgagatcatatccacgattttcccaa |
219 |
Q |
| |
|
||||||||| |||| | | |||| ||||||||||||| ||||| |||||||||||||||| |||||| || | ||||||||||||| || ||||||| |
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| T |
4192437 |
ttagaacctctattcaacatggaaatcatcaaagacccaaatgaacttggtgttacattcaaaaatagttgcaatgagatcatatccatga--ttcccaa |
4192534 |
T |
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| Q |
220 |
gcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaagatttgaa |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||| |
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| T |
4192535 |
------------------atagcttaaatattttacactttgaaccaaaactcaaagactcagttcgtgccacgttcaatctcacgcttgaagatttgat |
4192616 |
T |
|
| Q |
320 |
cgagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcatattcaaagccacaaactttatcatcttt |
403 |
Q |
| |
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| |||||||||||||||| | |||||||| |||| || ||||| |||||||||| ||| |||||||||| |||||||| |||| |
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| T |
4192617 |
caagataaagcaaatggtatcatcaaaattggaagttgttgataaaaatgaatcaaatttaaagccacaatctttatcagcttt |
4192700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 4233835 - 4234212
Alignment:
| Q |
20 |
tcttgatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctgag |
119 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| |||||||| ||||||| ||||||||||| || ||| |
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| T |
4233835 |
tcttgatggaaaatcctcaaccatgttcatcaaagcttgggcatatctatgcaacaaaactattgaaac---agaagaactgccaactttgttgccagag |
4233931 |
T |
|
| Q |
120 |
ttagaacctttatttgatagggaagtcatcaaagacccgaatgagcttggtgttacattcacaaatagctggaccgagatcatatccacgattttcccaa |
219 |
Q |
| |
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||| ||||| |||| || |||||| ||||||||||| |||| ||||||| || |||||||| | |||||| ||||| ||| ||| ||| ||||||| |
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| T |
4233932 |
ttaaaacctctattagacagggaaatcatcaaagac---aatggacttggtgataagttcacaaaaaactggacggagataataaccatgatgttcccaa |
4234028 |
T |
|
| Q |
220 |
gcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaagatttgaa |
319 |
Q |
| |
|
||||||||||| ||| | ||||| || ||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||| |||||||||||||| |
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|
| T |
4234029 |
atgaaaaaggaaatgaaagaagcttgaagattttaccttttgaaccaaaactcgaagactatgttcgttctacattcaagctcacacgtgaagatttgaa |
4234128 |
T |
|
| Q |
320 |
cgagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcatattcaaagccacaaactttatcatcttt |
403 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | || || ||||||| | ||| ||||||| ||||||||||||||| |
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|
| T |
4234129 |
taagataaagcaaatggtattatcaaaatgggaattattggacacgaatgaattaacttctaagccaccaactttatcatcttt |
4234212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 24 - 387
Target Start/End: Original strand, 4196093 - 4196453
Alignment:
| Q |
24 |
gatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctgagttag |
123 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||| | || ||| |
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| T |
4196093 |
gatggaaaatcctcaatcatgttcatcaaagcttgggcttatctatgcaacaaaaccattgaaacc---gaagaaccaccaactttgttgcgagaattac |
4196189 |
T |
|
| Q |
124 |
aacctttatttgatagggaagtcatcaaagacccgaatgagcttggtgttacattcacaaatagctggaccgagatcatatccacgattttcccaagcga |
223 |
Q |
| |
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|||| |||||||||||| | || | ||||| | |||| ||||||| || |||||||||| |||| ||| ||||| ||| || ||||||| || |
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| T |
4196190 |
aaccattatttgataggaatatcgtgaaagatctagatgaacttggtgataagttcacaaataattggagagagttcataaccaacatgttcccaaatga |
4196289 |
T |
|
| Q |
224 |
aaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaagatttgaacgag |
323 |
Q |
| |
|
||||||||||||| | |||| || |||||| ||||||||||| || |||||||| ||||||| || ||||| ||||| ||||||||||||||| || |
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| T |
4196290 |
aaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaacctcgaagactctcttcgtgctacgttcaagctcacacgtgaagatttgaacaag |
4196389 |
T |
|
| Q |
324 |
ataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcatattcaaagccac |
387 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | || |||||||||| | |||| ||||||| |
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|
| T |
4196390 |
ataaagcaaatggtgttaacaaaatgggaattattggacacaaatgaattaaattctaagccac |
4196453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 4250866 - 4251005
Alignment:
| Q |
20 |
tcttgatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctgag |
119 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||||||||||||| | ||| |||||| | ||| ||||||||||||||||| | ||| |
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| T |
4250866 |
tcttgatggaaaatcttcaaccatgttcgtcaaagcttgggcttatctatgcaaaaaagctattgaa---agagatgaatcaccaactttgttgtcagag |
4250962 |
T |
|
| Q |
120 |
ttagaacctttatttgatagggaagtcatcaaagacccgaatg |
162 |
Q |
| |
|
|| ||||||| ||| |||||||||||||||||||||| |||| |
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|
| T |
4250963 |
ttcgaaccttcattcaatagggaagtcatcaaagacccaaatg |
4251005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 4246440 - 4246570
Alignment:
| Q |
29 |
aaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaagaatcaccaactttgttacctgagttagaacct |
128 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||||||||||||||||| |||||| | |||||||| ||||||||||||||| |||| | |||||| ||||| |
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|
| T |
4246440 |
aaaatcttcaatcatcttcatcaaagcttgggcttatctatgcaacaaaacatttgaaacc---gaagaatcaccaactctgttgcaagagttaaaacct |
4246536 |
T |
|
| Q |
129 |
ttatttgatagggaagtcatcaaagacccgaatg |
162 |
Q |
| |
|
|||| | |||||| ||||||||||||| |||| |
|
|
| T |
4246537 |
atattcaacagggaaatcatcaaagacccaaatg |
4246570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 4251038 - 4251178
Alignment:
| Q |
213 |
ttcccaagcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaag |
312 |
Q |
| |
|
|||||||| ||||||||||| || | |||||||| ||||| | ||||||||| |||| |||||||| |||||||| || || || |||| | ||||| |
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| T |
4251038 |
ttcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaag |
4251137 |
T |
|
| Q |
313 |
atttgaacgagataaagcaaatggtgttatcaaaatgggaa |
353 |
Q |
| |
|
||||| | |||||||||||| |||||||| | ||||||| |
|
|
| T |
4251138 |
atttggataagataaagcaaagagtgttatctacatgggaa |
4251178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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