View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15918_low_5 (Length: 397)
Name: NF15918_low_5
Description: NF15918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15918_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 45016983 - 45017362
Alignment:
| Q |
1 |
atcatggtggacaattgtgattttgctgaagctatgaagtgtaacttttgctaaaatcaccatgacaaactacgatcccaccaaattcaccgtcaactca |
100 |
Q |
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| T |
45016983 |
atcatggtggacaattgtgattttgctgaagctataaagtgtaacttttgctaaaatcaccatgacaaactacgatcccaccaaattcactgtcaactca |
45017082 |
T |
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| Q |
101 |
aatatatatagacgtacaacttttcaatgatnnnnnnnn-caaaagatagtatagaagaatttacttgtaaatgggactgctgtcaagcataaaagatga |
199 |
Q |
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| T |
45017083 |
aatatatatagacgtacaacttttcaatgataaaaaaaaacaaaagatagtatagaagaatttacttgtaaatgggactgctgtcaagcataaaagatga |
45017182 |
T |
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| Q |
200 |
gaaagaccaagaagaagaatcacgaataaactaaagaaagatcctgccattcctgcactgcaatggcccttctcagaaacaagctctaggatgtgttgcc |
299 |
Q |
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| T |
45017183 |
gaaagaccaagaagaagaatcacgaataaactaaagaaagatcctgccattcctgcactgcaatggcccttctcagaaacaagctctaggatgtgttgcc |
45017282 |
T |
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| Q |
300 |
tcacttatgctagttctcaatttatatatcagcataagatctatgtgaatgnnnnnnnnaacatggaatgtatgatggagc |
380 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45017283 |
ttacttatgctagttctcaatttatataccagcataagatctatgtgaatg-tttttttaacatggaatgtatgatggagc |
45017362 |
T |
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