View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15919_high_13 (Length: 333)
Name: NF15919_high_13
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 42274837 - 42274519
Alignment:
| Q |
1 |
aagtaaatcactagcagaagacataaagaattataaaagaaaattaccgagaaaaaactaaacaattggataagaatgtaatactcctatttgataatag |
100 |
Q |
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| T |
42274837 |
aagtaaatcactagcagaagacataaagaattataaaagaaaatttccgagaaaaaactaaacaaatggataagaatgtaatactcctatttgataatag |
42274738 |
T |
|
| Q |
101 |
aatataatggtgtcatttattcaatgtaaggggctctacttggctttgttgtttgtgttgtcagatctttcagggtatagaggaaaaggatagaaaaagg |
200 |
Q |
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| T |
42274737 |
catataatggtgtcatttattcaatgtaaggggctctacttggctttgttatttgtgttgtcagatctttcagggtatagaggaagaggatagaaaaagg |
42274638 |
T |
|
| Q |
201 |
agagg--ctatttctataaattttctaatggagagtgctgagatctctggtacttcgaaaaggataaccaacatatgcgagtccaaaccagtctaggatg |
298 |
Q |
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| T |
42274637 |
agagggtctatttctataaatttgctaatggagagcgccgagatctctggtacttcgaaaaggataaccaacatatgcaagtccaaaccagtctaggatg |
42274538 |
T |
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| Q |
299 |
gaaagacagcgcatacaag |
317 |
Q |
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| T |
42274537 |
gaaagacagcgcatacaag |
42274519 |
T |
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