View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15919_high_2 (Length: 650)
Name: NF15919_high_2
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 261 - 606
Target Start/End: Original strand, 6452301 - 6452644
Alignment:
| Q |
261 |
gatcacattgaatcttcactagaatctttatatttttgcatgtaaattaactacctccgcgtgcaactttaaaacactaattcttgaagtctttgccaaa |
360 |
Q |
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| T |
6452301 |
gatcacattgaatcttcactcgaatctttatatttttgcatgtaaattgactacctccgcatgcaactttaaaacactaattcttcaagtctttgccaaa |
6452400 |
T |
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| Q |
361 |
cctaaatggaggcaacaattttctaaaagcttgaaccttgatgaatttccatactcatatttgaatccgagaccttgtcaaatctttgatattttatttt |
460 |
Q |
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| T |
6452401 |
cctaaatggaggaaacaattttctaaaagcttgaaccttgatgaatttccaaactcatatttgaatccgagaccttgtcaaatctttgattttttatttt |
6452500 |
T |
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| Q |
461 |
atgttttatgaacaagtcaaatctttgtacttaggatacatatatatattaacttaaataatgtaaataagcagatagacataattgaagtggttggttg |
560 |
Q |
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| T |
6452501 |
atgttttatgaacaagtcaaatctttgtacttaggatac--atatatattaacttaaataatgtaaataagaagatagacataattgaagtggttggttg |
6452598 |
T |
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| Q |
561 |
caaaacatataaaagaatgatagtcatggtcaaagtaaataatgca |
606 |
Q |
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| T |
6452599 |
caaaacatataaaagaatgatagtcatggtcaaagtaaataatgca |
6452644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 6452050 - 6452233
Alignment:
| Q |
13 |
aagaatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaaggcttt-gttccatcaaagaccaaattgttca |
111 |
Q |
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| T |
6452050 |
aagaatatatgacacatacatgcattaccaaatcattattgtgatagagtttgagaagaaatatttaaggcttttgttccatcaaagaccaaattgttca |
6452149 |
T |
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| Q |
112 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgactgaaaacttatacttatgaattaagttgatctg |
195 |
Q |
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| T |
6452150 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgaccgaaaacttatacttatgaactaagttgatctg |
6452233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 6451790 - 6451881
Alignment:
| Q |
16 |
aatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaagg-ctttgttccatcaaagaccaaatt |
106 |
Q |
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| T |
6451790 |
aatatatgacacatatatgtattaccaaatcattgttttgatagagtataagaagaaatatttaaggatttttttccatcaaggaccaaatt |
6451881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 602 - 633
Target Start/End: Original strand, 6452659 - 6452690
Alignment:
| Q |
602 |
atgcattaaacattggtattggtatcccatat |
633 |
Q |
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| T |
6452659 |
atgcattaaacattggtattggtatcccatat |
6452690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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