View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15919_high_4 (Length: 487)
Name: NF15919_high_4
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 6265740 - 6266203
Alignment:
| Q |
18 |
attcatgtgcttcattataagcttaacataaatttcttcaatcaaaactattttattaatgacgaattctagggcaagtgcttaactaagtccctcacta |
117 |
Q |
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| T |
6265740 |
attcatgtgcttcattataagcttaacataaatttcttcaatcaaaactattttattaatgacgaattctagggcaagtgcttaactaagtccctcacta |
6265839 |
T |
|
| Q |
118 |
atcaacattaaaaaattaccattagatttagttaatggtttgaatatgttgaaataaaaaatgagaacatgaacacattttcacacacaattctatccct |
217 |
Q |
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| T |
6265840 |
atcaacattaaaaaattaccattagatttagttaatggtttgaatatgttgaaataaaaaatgagaacatgaacacattttcacacacaattctatccct |
6265939 |
T |
|
| Q |
218 |
atctcttctccatttgcatcctctccaactcagaggaacatatgcagaatattctcacttagaataaaaaattgtactaaaatgataattgtaatcagtc |
317 |
Q |
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| T |
6265940 |
atctcttctccatttgcatcctctccaactcagaggaacatatgcagaatattctctcttagaataaaaaattgtactaaaatgataattgtaatcagtc |
6266039 |
T |
|
| Q |
318 |
aatttaaaagacgcattgttcctctttttcagatcttatattgaccgtttatattttgtttgtttaagggttgtttatactcttctctaatccttttggt |
417 |
Q |
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| T |
6266040 |
aatttaaaagacgtattgttcccctttttcggatcttatattgaccgtttatattttgtttgtttaatggttgtttatactcttctctaatccttttggt |
6266139 |
T |
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| Q |
418 |
aatggtaattttattaagcaactggaaccaatttaaagtttctagagttcgacttaacctttgc |
481 |
Q |
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| T |
6266140 |
aatggtaattttattaagcaactggaaccaatttaaagtttctagagttcgacttaacctttgc |
6266203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 34942192 - 34942114
Alignment:
| Q |
129 |
aaaattaccattagatttagttaatggtttgaatatgttgaaataaaaaatgagaacatgaacacattttcacacacaa |
207 |
Q |
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|||| ||||||| ||| || |||||||||| || | || ||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
34942192 |
aaaaataccattcgatctaattaatggtttagatttattaaaataaaaaatgagaccatcaacacatgttcacacacaa |
34942114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 34752141 - 34752091
Alignment:
| Q |
175 |
aaaatgagaacatgaacacattttcacacacaattctatccctatctcttc |
225 |
Q |
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|||||||||||||||| |||||| |||||||||||||| | |||| ||||| |
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| T |
34752141 |
aaaatgagaacatgaatacatttgcacacacaattctacctctatttcttc |
34752091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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