View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15919_high_6 (Length: 473)
Name: NF15919_high_6
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Original strand, 9126160 - 9126601
Alignment:
| Q |
14 |
atcaataccaatgcttgaattaaaatgctccactcttcaaactgaatcggatcctaaacctaaggaatcaatatgcagcattccttgaagaccaaatacc |
113 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9126160 |
atcaataccaatgtttgaatcaatatgctccactcttcaaactgaatcggatcctaaacctaaggaatcaatatgcagcattccttgaagaccaaatacc |
9126259 |
T |
|
| Q |
114 |
attaaacctctgtgttctttgtttaatctaaatgccatttgatgaattgcattgtttttggtaaagatacttggttttgcgacaaatgatagtgtgcctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9126260 |
attaaacctctgtgttctttgtttaatctaaatgccatttgatgaattgcattgtttttggtaaagatacttggttttgctacaaatgatagtgtgcctt |
9126359 |
T |
|
| Q |
214 |
gcttgtttcttactctttgtcttctctctaaagttggaaaattaaagttgattacaaaaggttttttatgctatatagtttgttggatgttatcagcact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9126360 |
gcttgtttcttactctttgtcttctctctaaagttgga-----aaagttgattacaaaaggtttattatgctatatagtttgttggatgttatcagcact |
9126454 |
T |
|
| Q |
314 |
ttgttacaattttcatgtcatttgtttcatttagacgcagaaggttcttagagcgctcaggttttcaaaaaagggctgctgcaactctttatgaaatgtt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9126455 |
ttgttacaattttcatgtcatttgtttcattcagacgcagaaggttcttagagcgctcagattttcaaaaaagggctgctgcaactctttatgaaatgtt |
9126554 |
T |
|
| Q |
414 |
ttcgtcgttttcacatttttggtgctatgttccctgctattcatctc |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9126555 |
ttcgtcgttttcacatttttggtgctatgttccctgctattcatctc |
9126601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 9162384 - 9162474
Alignment:
| Q |
280 |
tatgctatatagtttgttggatgtt--atcagcactttgttacaattttcatgtcatttgtttcatttagacgcagaaggttcttagagcg |
368 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| || ||||||| || |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
9162384 |
tatgctatatagtttgctgggtgttctatcagcacttaatttcaatttttatatcatttgtttcattcaggcgcagaaggttcttagagcg |
9162474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 3355675 - 3355637
Alignment:
| Q |
412 |
ttttcgtcgttttcacatttttggtgctatgttccctgc |
450 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3355675 |
tttttgtcgttttcacatttttggtactatgttccctgc |
3355637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 41620230 - 41620274
Alignment:
| Q |
211 |
cttgcttgtttcttactc-tttgtcttctctctaaagttggaaaa |
254 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
41620230 |
cttgcttgtttcttactcctttgtcttctcttgaaagttggaaaa |
41620274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University