View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15919_high_7 (Length: 417)
Name: NF15919_high_7
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 29665329 - 29664953
Alignment:
| Q |
8 |
ggtagataatactaaaactcatatacactataagatcctgatttaaatttggatgaagacgttcaaacctaataatttcaacattctcagttaaactaag |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29665329 |
ggtaaatactactaaaactcatatacactataagatccagattcaaacttgagtgaagacgttcaaacctaacaatttcaacattctcagttaaactaag |
29665230 |
T |
|
| Q |
108 |
ctttacagactgttgttaatatcttgnnnnnnnnnnnnnnnnnttaacatttctggttgaagaaattttgagtctcaaaagtatgatttggtaagtaacc |
207 |
Q |
| |
|
||||| ||||| | || || |||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
29665229 |
ctttagagactctccttgatctctt-taaaataaaataaaaaattaacattcctggttgaagaaattttgactctcaaaagtatgatttggcaagtaacc |
29665131 |
T |
|
| Q |
208 |
gtgttgtatttagtccaaatgaattgggaccaaatgcatgcactttttctcatatttaaaatgggtagaatattagtatataacttgggaaccgttcaca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29665130 |
gtgttgtatttagtccaaatgaattgggaccaaatgcatgcactttttctcatatttaaaatgggtagaatat---tatataacttgggaaccgttcaca |
29665034 |
T |
|
| Q |
308 |
tttcactnnnnnnnnnnnnnnnnaaactttactctttgtgtttttcctcacatatgtggtcaacaattttatactaactttatataatgtc |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29665033 |
tttcact----------tatataaaactttactctttgtgtttttcctcacatatgtggtcaacaattttatactaactttatataatgtc |
29664953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University