View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15919_low_10 (Length: 388)
Name: NF15919_low_10
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_low_10 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 9789580 - 9789764
Alignment:
| Q |
23 |
tagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagatacgtgggaacggttaagaagaataacttatat |
122 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9789580 |
tagatgcagtgaaaaatagtacctgtagatctgaaaagtctgacaacagcagcagctaggttgaagatatgtgggaacggttaagaagaataacttatat |
9789679 |
T |
|
| Q |
123 |
atataggcaaataaaaaatgtgggaacagttaagataagcatgtagaaaatgcgggaacagttaagaagaaaatgcgggaacacg |
207 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9789680 |
atataggcaaataaaaaatgcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagaaaatgctggaacacg |
9789764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 3586885 - 3586716
Alignment:
| Q |
23 |
tagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagatacgtgggaacggttaagaagaataacttatat |
122 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
3586885 |
tagatgcggtaaaaaatagtacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagagatgtgggaacggttaagaagaataacttatat |
3586786 |
T |
|
| Q |
123 |
atataggcaaataaaaaatgtgggaacagttaagataagcatgtagaaaatgcgggaacagttaagaagaa |
193 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3586785 |
atataggcaaataaaaaatgcgggaa-agttaagataaacatgtagaaaatgcgggaacagttaagaagaa |
3586716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 266 - 388
Target Start/End: Original strand, 9789854 - 9789976
Alignment:
| Q |
266 |
tagtgccaagcaggtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
365 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9789854 |
tagtgccaagcaagtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
9789953 |
T |
|
| Q |
366 |
aattttgtacattgaacaaaagc |
388 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9789954 |
aattttgtacattgaacaaaagc |
9789976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 266 - 388
Target Start/End: Complemental strand, 3586653 - 3586531
Alignment:
| Q |
266 |
tagtgccaagcaggtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
3586653 |
tagtgccaagcaggtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctacagcttctagtagaagctcaatttattc |
3586554 |
T |
|
| Q |
366 |
aattttgtacattgaacaaaagc |
388 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3586553 |
aattttgtacattgaacaaaagc |
3586531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 266 - 388
Target Start/End: Original strand, 11898875 - 11898997
Alignment:
| Q |
266 |
tagtgccaagcaggtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
365 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898875 |
tagtgccaagcaagtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
11898974 |
T |
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| Q |
366 |
aattttgtacattgaacaaaagc |
388 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
11898975 |
aattttgtacattgaacaaaagc |
11898997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 44504733 - 44504580
Alignment:
| Q |
23 |
tagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagatacgtgggaacggttaagaagaataacttatat |
122 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |
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| T |
44504733 |
tagatgcagtgaaaaatagta------gatctgaaaagtctgacaacagcagcagctaagttgaagagatgtgggaacggttaagaagaataacttatat |
44504640 |
T |
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| Q |
123 |
atataggcaaataaaaaatgtgggaacagttaagataagcatgtagaaaatgcgggaaca |
182 |
Q |
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|||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
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| T |
44504639 |
atataggcaaataaaaaatgcgggaacagttgagataaacatgtagaaaatgcgggaaca |
44504580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 266 - 388
Target Start/End: Complemental strand, 44504518 - 44504396
Alignment:
| Q |
266 |
tagtgccaagcaggtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
365 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44504518 |
tagtgccaagcgggtttcgaagtgtgttccattgcacaaaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
44504419 |
T |
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| Q |
366 |
aattttgtacattgaacaaaagc |
388 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44504418 |
aattttgtacattgaacaaaagc |
44504396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 266 - 388
Target Start/End: Complemental strand, 31678311 - 31678189
Alignment:
| Q |
266 |
tagtgccaagcaggtttcgaagtgtgttctagtgcacagaagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattc |
365 |
Q |
| |
|
|||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
31678311 |
tagtgccaagtaggtttcaaagtgtgttccaatgcacagaagctccgaattttttccaaaagttcatttctacagcttcttgtagaagctcaatctattc |
31678212 |
T |
|
| Q |
366 |
aattttgtacattgaacaaaagc |
388 |
Q |
| |
|
||||||||||||| ||||||||| |
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| T |
31678211 |
aattttgtacattaaacaaaagc |
31678189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 31678617 - 31678513
Alignment:
| Q |
23 |
tagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcagcagctaggttgaagatacgtgggaacggttaagaagaataacttatat |
122 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
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| T |
31678617 |
tagatgcggtgaaaaatcgtacctgtagatctgaaaagtctgacaacagcagcagctaggttgaaaagatgtgggaacggttaagaagaataacttatat |
31678518 |
T |
|
| Q |
123 |
atata |
127 |
Q |
| |
|
||||| |
|
|
| T |
31678517 |
atata |
31678513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 31678441 - 31678388
Alignment:
| Q |
138 |
aaatgtgggaacagttaagataagcatgtagaaaatgcgggaacagttaagaag |
191 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31678441 |
aaatgcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaag |
31678388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 17131780 - 17131862
Alignment:
| Q |
306 |
agctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17131780 |
agctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagc |
17131862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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