View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15919_low_16 (Length: 289)
Name: NF15919_low_16
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15919_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 3946906 - 3947163
Alignment:
| Q |
14 |
aaatgaataatgttaatgactgagaaattcaagtcaaagtgtagagaattgtgtgtcaaaacataaacgtaatgccctcactatattgttgcaggaccat |
113 |
Q |
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| T |
3946906 |
aaatgaataatgttaatgactgagaaattcaagtcaaagtgtagagaattgtgtgtcaaaacataaacgtaatgccctcactatattgttgcaggaccat |
3947005 |
T |
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| Q |
114 |
tgtctaattgattcgttgcacggatggcaggatggaagacttccagtggatatcacttgtgtaattaggtgaaatttcataaactactaagccaaaccga |
213 |
Q |
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| T |
3947006 |
tgtctaattgattcgttgcacggatggcaggatggaagacttccagtggatatcacttgtgtaattaggtgaaatttcataaactactaagccaaaccga |
3947105 |
T |
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| Q |
214 |
tttatgtttttctatatactagtaatatattttttcaatcttactcattgtcttcaat |
271 |
Q |
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| T |
3947106 |
tttatgtttttctatatactggtaatatattttttcaatcttactcattgtattcaat |
3947163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 5275169 - 5275080
Alignment:
| Q |
103 |
tgcaggaccattgtctaattgattcgttgcacggatggcaggatggaagacttccagtggatatcacttgtgtaattaggtgaaatttca |
192 |
Q |
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| T |
5275169 |
tgcaggaccactgcctagttgatttattacatggatggcaggacggaaaacttccggtggatatcacctgtgtaattaggtgaaatttca |
5275080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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