View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15919_low_19 (Length: 237)

Name: NF15919_low_19
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15919_low_19
NF15919_low_19
[»] chr1 (1 HSPs)
chr1 (46-223)||(16682602-16682783)
[»] chr3 (2 HSPs)
chr3 (1-50)||(3586430-3586479)
chr3 (1-40)||(9790028-9790067)
[»] chr6 (1 HSPs)
chr6 (1-49)||(17131914-17131962)
[»] chr8 (2 HSPs)
chr8 (1-48)||(44504297-44504344)
chr8 (1-40)||(11899049-11899088)
[»] chr4 (1 HSPs)
chr4 (1-48)||(31678090-31678137)
[»] chr7 (1 HSPs)
chr7 (123-177)||(25577766-25577820)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 16682602 - 16682783
Alignment:
Q  46 tctaaattgacatcgaggagaatcgaactttaatattttattattatatagtagacgtattaaattatttataagtgatgctaactagtgctcccagagc 145  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||| ||||||||    
T  16682602 tctaaattgacatcgaggagaatcaaactttaatattttattattatataatagatgtattaaattatttatgagtgatgctaaccagtgcccccagagc 16682701  T
Q  146 agtagtcaaggaaacataaaagataagttttgtattnnnnnnncaaa----ctatgcttttatttatttaattatacaagtt 223  Q
    | |||| ||| |||||||||||||||||||||||||        |||    ||||||||||||||||||||||| |||||||    
T  16682702 actagttaagaaaacataaaagataagttttgtattaaaaaaaaaaaaaaactatgcttttatttatttaattacacaagtt 16682783  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3586479 - 3586430
Alignment:
Q  1 ccttataaggagaagagaagcccaaaaaagcttggccaaacaagctctaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3586479 ccttataaggagaagagaagcccaaaaaagcttggccaaacaagctctaa 3586430  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9790028 - 9790067
Alignment:
Q  1 ccttataaggagaagagaagcccaaaaaagcttggccaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9790028 ccttataaggagaagagaagcccaaaaaagcttggccaaa 9790067  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17131914 - 17131962
Alignment:
Q  1 ccttataaggagaagagaagcccaaaaaagcttggccaaacaagctcta 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17131914 ccttataaggagaagagaagcccaaaaaagcttggccaaacaagctcta 17131962  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44504344 - 44504297
Alignment:
Q  1 ccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct 48  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44504344 ccttataaggagaagagaagcccaaaaaagcttagccaaacaagctct 44504297  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11899049 - 11899088
Alignment:
Q  1 ccttataaggagaagagaagcccaaaaaagcttggccaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11899049 ccttataaggagaagagaagcccaaaaaagcttggccaaa 11899088  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31678137 - 31678090
Alignment:
Q  1 ccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct 48  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  31678137 ccttataaggagaatagaagcccaaaaaagcttggccaaacaagctct 31678090  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 25577766 - 25577820
Alignment:
Q  123 atgctaactagtgctcccagagcagtagtcaaggaaacataaaagataagttttg 177  Q
    ||||||| |||||| ||| ||||| |||||||||||||| ||||| |||||||||    
T  25577766 atgctaagtagtgcccccggagcactagtcaaggaaacaaaaaaggtaagttttg 25577820  T

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