View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15919_low_20 (Length: 231)

Name: NF15919_low_20
Description: NF15919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15919_low_20
NF15919_low_20
[»] chr1 (4 HSPs)
chr1 (20-183)||(22911038-22911202)
chr1 (64-183)||(39625076-39625197)
chr1 (16-114)||(13787844-13787941)
chr1 (16-114)||(25806201-25806298)
[»] chr5 (2 HSPs)
chr5 (16-138)||(37300305-37300426)
chr5 (16-114)||(36992669-36992766)
[»] chr4 (6 HSPs)
chr4 (41-184)||(34736202-34736344)
chr4 (16-138)||(21804519-21804651)
chr4 (16-184)||(21631147-21631326)
chr4 (16-126)||(53829063-53829172)
chr4 (16-114)||(46093926-46094023)
chr4 (16-114)||(2503431-2503528)
[»] chr2 (4 HSPs)
chr2 (16-138)||(29456992-29457114)
chr2 (16-138)||(43565783-43565905)
chr2 (16-114)||(7572521-7572618)
chr2 (16-114)||(16667116-16667213)
[»] chr8 (4 HSPs)
chr8 (16-138)||(917341-917463)
chr8 (16-184)||(10187950-10188129)
chr8 (16-138)||(4139912-4140044)
chr8 (16-114)||(28844536-28844633)
[»] chr3 (5 HSPs)
chr3 (16-126)||(35872031-35872140)
chr3 (16-120)||(48267940-48268043)
chr3 (16-114)||(52351341-52351438)
chr3 (147-184)||(35871976-35872013)
chr3 (147-184)||(48267878-48267915)
[»] chr7 (4 HSPs)
chr7 (16-114)||(5766917-5767014)
chr7 (16-184)||(47232176-47232341)
chr7 (16-114)||(25418005-25418102)
chr7 (16-114)||(39065534-39065631)
[»] chr6 (2 HSPs)
chr6 (16-114)||(13431883-13431980)
chr6 (63-177)||(18884192-18884307)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 22911038 - 22911202
Alignment:
Q  20 atattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatcctcc 119  Q
    ||||||||||| | |||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22911038 atattcttttcccataacttataatatattaaaatagaccaccgaaattatttgtttacaactcatcaattatacgctacataattacctcgcatcctcc 22911137  T
Q  120 tttaatccaacactgcact-tnnnnnnntcattcccaacactttttttaattcatttcttattct 183  Q
      |||||||||||||||||         ||||||||||||||| ||||||||||||||| |||||    
T  22911138 actaatccaacactgcactccaaaaaaatcattcccaacacttcttttaattcatttctcattct 22911202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 39625197 - 39625076
Alignment:
Q  64 aaattatttgtttacaactcatcaattatacgctacataattacctcac--atcctcctttaatccaacactgcacttnnnnnnntcattcccaacactt 161  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||        |||||||||||||||    
T  39625197 aaatcatttgtttacaactcatcaattatacgctacataattacctcacagatcctcctctaatccaacacggcactccaaaaaatcattcccaacactt 39625098  T
Q  162 tttttaattcatttcttattct 183  Q
     |||||||| |||||| |||||    
T  39625097 cttttaatttatttctcattct 39625076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 13787941 - 13787844
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13787941 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 13787844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 25806201 - 25806298
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25806201 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 25806298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 37300305 - 37300426
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||||||||||||| | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37300305 tcacatattcttttcccataacttataatatattaaaatagacatcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacatc 37300403  T
Q  116 ctcctttaatccaacactgcact 138  Q
    ||||| |||||||||||||||||    
T  37300404 ctcctctaatccaacactgcact 37300426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 36992766 - 36992669
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaataga-ctcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||||| | |||||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36992766 tcacacattcttttcccataacttataatatattaaaatagagctc--gaaattatttgtttacaactcatcaattatacgctacatgattacctcacat 36992669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 34736202 - 34736344
Alignment:
Q  41 taatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatcctcctttaatccaacactgcacttn 140  Q
    ||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||      
T  34736202 taatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacatcctcctctaatccaacactgcactcc 34736300  T
Q  141 nnnnnntcattcccaacactttttttaattcatttcttattctc 184  Q
          ||||||||||||||| ||||||||||||||| ||||||    
T  34736301 aaaaaatcattcccaacacttcttttaattcatttctcattctc 34736344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 21804651 - 21804519
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgct----------acataatt 105  Q
    ||||||| ||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          ||||||||    
T  21804651 tcacatactctttttccataacttataatatattaaaatagacccctaaaattatttgtttacaactcatcaattatacgctatataattacacataatt 21804552  T
Q  106 acctcacatcctcctttaatccaacactgcact 138  Q
    ||||||||||||||| |||||||||| ||||||    
T  21804551 acctcacatcctcctctaatccaacaatgcact 21804519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 21631147 - 21631326
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgct----------acataatt 105  Q
    ||||||| ||||||  | ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||          ||||| ||    
T  21631147 tcacatactctttttccataacttataatatattaaaatagacccatgaaattatttgtttacaactcatcaattatacgctatataattacacatagtt 21631246  T
Q  106 acctcacatcctcctttaatccaacactgcact-tnnnnnnntcattcccaacactttttttaattcatttcttattctc 184  Q
    ||||||||||||||| |||||||||||||||||         ||||||||||||||| ||||||||||||||| ||||||    
T  21631247 acctcacatcctcctctaatccaacactgcactccaaaataatcattcccaacacttcttttaattcatttctcattctc 21631326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 53829063 - 53829172
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||||||||||||| | |||||||||||||||||||||||||  | ||| |||||||| ||||||||||||||||||||||| || |||||||||||||    
T  53829063 tcacatattcttttcccataacttataatatattaaaatagacctcgaaa-ttatttgtgtacaactcatcaattatacgctagatgattacctcacatc 53829161  T
Q  116 ctcctttaatc 126  Q
    ||||| |||||    
T  53829162 ctcctctaatc 53829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 46094023 - 46093926
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaataga-ctcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||||| | |||||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46094023 tcacacattcttttcccataacttataatatattaaaatagagctc--gaaattatttgtttacaactcatcaattatacgctacatgattacctcacat 46093926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 2503431 - 2503528
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2503431 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 2503528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 29457114 - 29456992
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||||||||||||| | |||| ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29457114 tcacatattcttttcccataacctataatatattaaaatagaccttcgaaattatttgtttacaactcatcaattatacgctacataattatctcacatc 29457015  T
Q  116 ctcctttaatccaacactgcact 138  Q
    ||| |||||||||||||| ||||    
T  29457014 ctcttttaatccaacactacact 29456992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 43565905 - 43565783
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||||||||||||| | |||| ||||||||||||||||||||  |  |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  43565905 tcacatattcttttcccataacctataatatattaaaatagacctccgaaattatttgctaacaactcatcaattatacgctacataattacctcacatc 43565806  T
Q  116 ctcctttaatccaacactgcact 138  Q
    ||||| |||||||||||| ||||    
T  43565805 ctcctctaatccaacactacact 43565783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 7572521 - 7572618
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7572521 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 7572618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 16667116 - 16667213
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16667116 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 16667213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 917341 - 917463
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||||||||||||| | |||| ||||||||||||||||||||  |  || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  917341 tcacatattcttttcccataacctataatatattaaaatagacctccgaagttatttgtttacaactcatcaactatacgctacataattacctcacatc 917440  T
Q  116 ctcctttaatccaacactgcact 138  Q
     |||| |||||||| ||||||||    
T  917441 atcctctaatccaatactgcact 917463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 10188129 - 10187950
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgct----------acataatt 105  Q
    ||||||| ||||||  | ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||          ||||||||    
T  10188129 tcacatactctttttccataacttataatatattaaaatagacccatgaaattatttgtttacaactcatcaattatacgctaaataattacacataatt 10188030  T
Q  106 acctcacatcctcctttaatccaacactgcact-tnnnnnnntcattcccaacactttttttaattcatttcttattctc 184  Q
    ||||||||||||||| |||||||||||||||||         ||||||||||||||| ||||||||||||||| ||||||    
T  10188029 acctcacatcctcctctaatccaacactgcactccaaaataatcattcccaacacttcttttaattcatttctcattctc 10187950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 4140044 - 4139912
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataa----------tt 105  Q
    ||||||| ||||||  | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||          ||    
T  4140044 tcacatactctttttccataacttataatatattaaaatagacccctgaaattatttgtttacaactcatcaattatacgctacataattacacataatt 4139945  T
Q  106 acctcacatcctcctttaatccaacactgcact 138  Q
    ||||||||||||||| |||||||||||||||||    
T  4139944 acctcacatcctcctctaatccaacactgcact 4139912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 28844633 - 28844536
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||||| | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28844633 tcacacattcttttcccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 28844536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 35872140 - 35872031
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||| ||||||||| | |||||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||| |||||| |||||||||||||    
T  35872140 tcacaaattcttttcccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacactacatgattacctcacatc 35872042  T
Q  116 ctcctttaatc 126  Q
    ||||| |||||    
T  35872041 ctcctctaatc 35872031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 48268043 - 48267940
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacatc 115  Q
    ||||| ||| ||||| | |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  48268043 tcacacatttttttcccataacttataatatattaaaatagacctc-aaaattatttgtttacaactcatcaattatacgctacatgattacctcgcatc 48267945  T
Q  116 ctcct 120  Q
    |||||    
T  48267944 ctcct 48267940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 52351438 - 52351341
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52351438 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 52351341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 35872013 - 35871976
Alignment:
Q  147 tcattcccaacactttttttaattcatttcttattctc 184  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  35872013 tcattcccaacacttcttttaattcatttctcattctc 35871976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 48267915 - 48267878
Alignment:
Q  147 tcattcccaacactttttttaattcatttcttattctc 184  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  48267915 tcattcccaacacttcttttaattcatttctcattctc 48267878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 5766917 - 5767014
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||||| | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5766917 tcacacattcttttcccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 5767014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 47232176 - 47232341
Alignment:
Q  16 tcacatattcttttctcctaactt-ataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||||||||||||| | ||| || |||||||||||||||||||  | ||| |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  47232176 tcacatattcttttcccataattttataatatattaaaatagacctcgaaa-ttatttctttacaactcatcaattatacgctacatgattacctcacat 47232274  T
Q  115 cctcctttaatc-caacactgcacttnnnnnnntcattcccaacactttttttaattcatttcttattctc 184  Q
    |||||| ||||| | ||||| ||          ||||||||||||||| ||||||||||||||| ||||||    
T  47232275 cctcctctaatcactacactcca----aaaaaatcattcccaacacttcttttaattcatttctcattctc 47232341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 25418005 - 25418102
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25418005 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 25418102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 39065534 - 39065631
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||||| | |||||||||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  39065534 tcacacattcttttcccataacttataatatattaaaatagacctcgaaa-ttatttgtttacacctcatcaattatacactacatgattacctcacat 39065631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 13431883 - 13431980
Alignment:
Q  16 tcacatattcttttctcctaacttataatatattaaaatagactcctaaaattatttgtttacaactcatcaattatacgctacataattacctcacat 114  Q
    ||||| ||||||| | | |||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13431883 tcacacattctttccccataacttataatatattaaaatagacctcgaaa-ttatttgtttacaactcatcaattatacgctacatgattacctcacat 13431980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 18884307 - 18884192
Alignment:
Q  63 aaaattatttgtttacaactcatcaattatacgctacataattacctcac--atcctcctttaatccaacactgcacttnnnnnnntcattcccaacact 160  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||        ||||||||||||||    
T  18884307 aaaatcatttgttta-aactcatcaattatacgctacataattacctcacagatcctcctctaatccaacacggcactccaaaaaatcattcccaacact 18884209  T
Q  161 ttttttaattcatttct 177  Q
    | |||||||| ||||||    
T  18884208 tcttttaatttatttct 18884192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University