View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591_high_1 (Length: 745)
Name: NF1591_high_1
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 12 - 638
Target Start/End: Original strand, 4419550 - 4420179
Alignment:
| Q |
12 |
atcaatatgaaatttgtagccatatgtaatctaacggtcgatatgtatttatgtttttaaaaagtttcatataagtctaattgaaattatttataaattg |
111 |
Q |
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| T |
4419550 |
atcaatatgaaatttgtagccatatgtaatctaacggtcgatatgtatttatgtttttaaaaagtttcatataagtctaattgaaattatttataaattg |
4419649 |
T |
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| Q |
112 |
t-caaatggttataatgtgatattaagtagagtaatttatttgagaattggatagctcaattaatttgagataagagattaaattaattaagaaatcaac |
210 |
Q |
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| T |
4419650 |
ttcaaatggttataatgtgatattaagtagagtaatttatttgagaattgaatagctcaattaatttgagataagagattaaattagttaagaaatcaac |
4419749 |
T |
|
| Q |
211 |
cattcagagtttgaatcatatctcttcatgaaacatattaactaatattgatagaaaaggatgtgtgcaatgaacataatacacacatgatagatgatta |
310 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
4419750 |
cattcatagtttgaatcatatctcttaacgaaacatattaactaatattgatagaaaagggtgtgtgcaatgaaaataatacacacatgatagatgatta |
4419849 |
T |
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| Q |
311 |
gatcacttaatcattcattggtttaccnnnnnnntaa--gtgtgcgtaaccttttcttcccattaatttaacttcactaaaacaaatatagaaaaaacaa |
408 |
Q |
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| T |
4419850 |
gatcacttaatcattcattggtttaccaaaaaaataagtgtgtgcgtaacctttccttcccattaatttaacttcactaaaacaaatatagaaaaaacaa |
4419949 |
T |
|
| Q |
409 |
tatttacatttatgcatatcataatgggccttcatttttgggtcaaatgattaagatattcgtcattgctaaatttgcttcccacgcctgtcttatttgt |
508 |
Q |
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| T |
4419950 |
tatttacatttatgcatatcataatgggccttcatttttgggtcaaatgattaagatattcgtcattgctaaatttgcttcccacgcctgtcttatttgt |
4420049 |
T |
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| Q |
509 |
ttaatttttatcacgcaaaatatttatgtttagagtttgaactgaacaaaccaatttacttgatctcaaatataaaacattctaattcaatcagattgta |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4420050 |
ttaatttttatcacgcaaaatatttatgtttagagtttgaactgaacaaaccaatttacttgatctcaaatataaaacattctaattcaatcagattgta |
4420149 |
T |
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| Q |
609 |
ttgaggactgattgtgattggttcaattgg |
638 |
Q |
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| T |
4420150 |
ttgaggactgattgtgattggttcaattgg |
4420179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 678 - 745
Target Start/End: Original strand, 4420219 - 4420286
Alignment:
| Q |
678 |
caatcgttgcaaaatacttcattcttctaaacaccacaccacctccataaagtattaaccacatttac |
745 |
Q |
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| T |
4420219 |
caatcgttgcaaaatacttcattcttctaaacaccacaccacctccataaagtattaaccacatttac |
4420286 |
T |
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