View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591_high_2 (Length: 400)
Name: NF1591_high_2
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 4818826 - 4819203
Alignment:
| Q |
13 |
atactcggtttgcgaaaaaatacttggctaaatttattcatccacaaatccctttgtatttgatcctttgtaacctgggttctagtatactcaaatgcgc |
112 |
Q |
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| T |
4818826 |
atactcggtttgcgaaaaaatacttggctaaatttattcatccacaaatccctttgtatttgatcctttgtaacctgggttctagtatactcaaatgcgc |
4818925 |
T |
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| Q |
113 |
tttattaccgagtagccctttacacacgtcagtagccagcagcgcccttgtatcactggtatattttcttgaatgcaaatcctaaagcaactatcttctt |
212 |
Q |
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| T |
4818926 |
tttattaccgagtagcccttaacacacgtcagtagccagcagcgcccttgtatcactggtatcttttcttgaaggaaaatcctaaagcaactatcttctt |
4819025 |
T |
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| Q |
213 |
gttagaaaatttgttaggcattgatggga-------ccagggaccacattgttcatgaaccgactcttctgataatcgttgatcttgataacttttttct |
305 |
Q |
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| T |
4819026 |
gttagaaaatttgttaggcattgatgggaccagggtccagggaccacattgttcgtgaaccgactcttctgataatcgttgatcttgataacttgtttct |
4819125 |
T |
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| Q |
306 |
aatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaac |
383 |
Q |
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| T |
4819126 |
aatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaac |
4819203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 383
Target Start/End: Original strand, 4806155 - 4806268
Alignment:
| Q |
269 |
ctcttctgataatcgttgatcttgataacttttttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctt |
368 |
Q |
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| T |
4806155 |
ctcttctaataatcgttgatcttcataacttatttccaatattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatctt |
4806253 |
T |
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| Q |
369 |
tttggaagcaagaac |
383 |
Q |
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| T |
4806254 |
ttcggaagaaagaac |
4806268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 4845208 - 4845260
Alignment:
| Q |
27 |
aaaaaatacttggctaaatttattcatccacaaatccctttgtatttgatcctt |
80 |
Q |
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| T |
4845208 |
aaaaaatacttggctaa-ttgattcatccacaaatccctttgtatttgatcctt |
4845260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 4824140 - 4824218
Alignment:
| Q |
301 |
tttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaa |
379 |
Q |
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|||| |||||||||||||||| |||| ||| | || | ||||||||||||||||||| |||||| |||||||||||| |
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| T |
4824140 |
tttccaatattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaa |
4824218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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