View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1591_high_4 (Length: 360)
Name: NF1591_high_4
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 2687148 - 2687480
Alignment:
| Q |
11 |
cacagatgggacgccaaagaaatcgaagaccttccagattacatgaagttttgcttcaatgcacttcaagatgtcacaaatgaaattgcttatgatattg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687148 |
cacagatgggacgccaaagaaatcgaagaccttccagattacatgaagttttgcttcaatgcacttcaagatgtcacaaatgaaattgcttatgatattg |
2687247 |
T |
|
| Q |
111 |
gaggagaaaagaacttcaattttgtgttacattatctaaagaaaacggtactaataataatatattaatcataaacagtaatttatattttgaaaatgta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2687248 |
gaggagaaaagaacttcaattttgtgttacattacctaaagaaaacggtactaatgttaatatattaatcataaacagtaatttttattttgaaaatgta |
2687347 |
T |
|
| Q |
211 |
aaaa-ccttaaaagatatgaatcattatttgcttatgattattctcatattttcacagtggattgaattttgcaaagcattatatgtggaagcaaagtgg |
309 |
Q |
| |
|
|||| | || |||||||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2687348 |
aaaatcattgaaagatatgaatcaatatttgcttatg---atcctcacattttcacagtggattgaattttgcaaagcattatatgtggaagcaaagtgg |
2687444 |
T |
|
| Q |
310 |
tacaaaacaggatatattccatcgttgcaagaatat |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2687445 |
tacaaaaccggatatattccatcgttgcaagaatat |
2687480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 2681684 - 2681833
Alignment:
| Q |
11 |
cacagatgggacgccaaagaaatcgaagaccttccagattacatgaagttttgcttcaatgcacttcaagatgtcacaaatgaaattgcttatgatattg |
110 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||| || ||||||||| |||||||||||||| ||||||| |||| || |||||||||||||||||||| |
|
|
| T |
2681684 |
cacagatgggatgccaaagaaaatgaagaacttcttgagtacatgaagatttgcttcaatgcagttcaagaagtcagaa-tgaaattgcttatgatattg |
2681782 |
T |
|
| Q |
111 |
gaggagaaaagaacttcaattttgtgttacattatctaaagaaaacggtac |
161 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2681783 |
aaggagaaaaaaacgtcaattttgtgttacattacctaaagaaaacggtac |
2681833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University