View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591_low_10 (Length: 249)
Name: NF1591_low_10
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 34423417 - 34423653
Alignment:
| Q |
13 |
aatatgaaatgtaattttaagtgatgtaaattttggagctacatgggaacctataacctgtagttctcatttctgcattaaaaactattcatgcattcaa |
112 |
Q |
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| T |
34423417 |
aatatgaaatgtaattttaagtggtgtaaattttggagctacatgggaacctataacctgtagttctcatttctgcattaaaaactattcatgcattcaa |
34423516 |
T |
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| Q |
113 |
atgagctctcagaacgttgctttgcttttgaatgatgatatcaacgactgttaatgatgaattgcttaataaatagtgctacaaagcttatatggcagag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34423517 |
atgagctctcagaacgttgctttgcttttgaatgatgatatcaacgactgttaatgatgaattgcttaatgaatagtgctacaaagcttatatggcagag |
34423616 |
T |
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| Q |
213 |
tctagggaaggttgaacccattgcaggtctattctgt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34423617 |
tctagggaaggttgaacccattgcaggtctattctgt |
34423653 |
T |
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