View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591_low_4 (Length: 387)
Name: NF1591_low_4
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 54268315 - 54267941
Alignment:
| Q |
18 |
cttaacctaagatggattattgacaataataataattatgaaaactctttattccctgtggagatggagatgga------------tggtgctgctcatg |
105 |
Q |
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| T |
54268315 |
cttaacataagatggattattgacaataataataattatgaaaactctttattccctgtggagatggagatggagatggagatggatggtgctgctcatg |
54268216 |
T |
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| Q |
106 |
atctgattgcattctcaggagctgctacaaatgctgaatttagggacatatcaactattaacagtagaggaggaggaggagtagttggtcctatgggaat |
205 |
Q |
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| T |
54268215 |
atctgattgcattctcaggagctgctacaaatgctgaatttagggacatatcaattattaacagtagaggaggaggaggagtagttggtcctatgggaat |
54268116 |
T |
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| Q |
206 |
agattcttggccacatgctcaacttgtctaaagtctaaactacctagcactagtagcagtagcttcattcatgtatatgtactgtacttccgtatactga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54268115 |
agattcttggccacatgctcaacttgtctaaagtctaaactacctagcactagtagcagtagcttcattcatgtatatgtactgtacttccgtatactga |
54268016 |
T |
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| Q |
306 |
cctgcggtaactactactacgtactaactacagtaccataaataattttgtactatgtctatgcctatgcctatg |
380 |
Q |
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| T |
54268015 |
cctgcggtaactactactacgtactaactacagtaccataaataattttgtactatgcctatgcctatgcctatg |
54267941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 21132193 - 21132231
Alignment:
| Q |
282 |
atgtactgtacttccgtatactgacctgcggtaactact |
320 |
Q |
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| T |
21132193 |
atgtattgtacttcggtatactgacctgcggtaactact |
21132231 |
T |
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