View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591_low_6 (Length: 311)
Name: NF1591_low_6
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 24046423 - 24046137
Alignment:
| Q |
20 |
gtaatccagagttcgaccctagttcaaaactaattaaacaacatgtaat---acatacctcatttgagacaacatcaagttttttctgatcctccccttg |
116 |
Q |
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| T |
24046423 |
gtaatccagagttcgaccctagttcaaaactaattaaataacatgtaattatacatacctcatttgagacaacatcaagttttttctgatcctccccttg |
24046324 |
T |
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| Q |
117 |
aatatttacagcaccttgaacaccagtaaggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatactattcaaaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046323 |
aatatttacagcaccttgaacaccagtaaggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatactattcaaaaca |
24046224 |
T |
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| Q |
217 |
atagtaagttcagcatcaataacccctgtttgttcttgcttcaacaaccaactagtcaatgttataagctcataactacttcttttc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046223 |
atagtaagttcagcatcaataacccctgtttgttcttgcttcaacaaccaactagtcaatgttataagctcataactacttcttttc |
24046137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 24069127 - 24068980
Alignment:
| Q |
63 |
tgtaatacatacctcatttgagacaacatcaagttttttctgatcctccccttgaatatttacagcaccttgaacaccagta---aggttagaaatatta |
159 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| || ||| || |||| ||||| | |||||||||| |||| ||||||||||||||| |
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| T |
24069127 |
tgtactacatacctcatttgagacaacatcaagttttttctggtcttccttttcaatacttacaactccttgaacacaagtacggaggttagaaatatta |
24069028 |
T |
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| Q |
160 |
gctctttgaaccaaagaagcaatctgtttacatgccaacgaaatacta |
207 |
Q |
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| T |
24069027 |
gctatttgaatcaaagaaacaatttgcttacatgccatggaaatacta |
24068980 |
T |
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