View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592-INSERTION-1 (Length: 392)
Name: NF1592-INSERTION-1
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592-INSERTION-1 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 41080535 - 41080151
Alignment:
| Q |
7 |
agcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgtgacatagacaatttactcacagctt |
106 |
Q |
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| T |
41080535 |
agcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgtgacatagacaatt-actcacagctt |
41080437 |
T |
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| Q |
107 |
tagatgttattgttgattcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaataaccccacttgccaagaatgttccaaacatatcga |
206 |
Q |
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| T |
41080436 |
tagatgttattgttgattcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaataaccccacttgccaagaatgttccaaacatatcga |
41080337 |
T |
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| Q |
207 |
cattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaatcacataagctccagacatgaactacctgacccattgaca |
306 |
Q |
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| T |
41080336 |
cattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaatcacataagctccagacatgaactagctgacccattgaca |
41080237 |
T |
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| Q |
307 |
aaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaatatatatcttccaacttaagaggggatatt |
392 |
Q |
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| T |
41080236 |
aaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaagaggggatatt |
41080151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 41091872 - 41091506
Alignment:
| Q |
20 |
tgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgtgacatagacaatttactcacagcttta-gatgttattg |
118 |
Q |
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| T |
41091872 |
tgctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagttactgtggcttaaac-------tcaaagctttttgatgttattg |
41091780 |
T |
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| Q |
119 |
ttgattcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaataaccccacttgccaagaatgttccaaacatatcgacattgattgtca |
218 |
Q |
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| T |
41091779 |
ttggttcaagcattgtattttgtgatagtcaaagtggcatccaacttgcaactaagcccatttgccaagaacgttacaaacatatcgacttcgattgtga |
41091680 |
T |
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| Q |
219 |
ttttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaatca---cata--agctccagacatgaactacctgacccattgacaaaagcac |
313 |
Q |
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| T |
41091679 |
ttttatccgggaatatgtttgttctagtttcctcaaacttgttcacaatcatatcataacaactccaaacatcaactagctgacccattgaaaaaagcac |
41091580 |
T |
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| Q |
314 |
tacctaaaatcccttttcagcatctcatttcctagttggggatattgaatatatatcttccaacttaagagggg |
387 |
Q |
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| T |
41091579 |
tacctaaaatccctattctgcatctcatttccaagttggggatttcaaacatatatcttccaacttgagagggg |
41091506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 41101822 - 41101610
Alignment:
| Q |
178 |
acttgccaagaatgttccaaacatatcgacattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaatca---cata- |
273 |
Q |
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| T |
41101822 |
acttgccaagaacgttccaaacatatcaacttcaattgtgattttatcctggaatatgtttgttcttgtttcctcaaacttgttcacaatcatatcatat |
41101723 |
T |
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| Q |
274 |
-agctccagacatgaactacctgacccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaata-tatatct |
371 |
Q |
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| T |
41101722 |
cagctccaaacatcaactagcttacccattgaaaaaagcactacc-aaaatcccttttcagcatctcatttccaagttggagatattgaacattatacct |
41101624 |
T |
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| Q |
372 |
tccaacttaagagg |
385 |
Q |
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| T |
41101623 |
tccaacttgagagg |
41101610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 41101932 - 41101860
Alignment:
| Q |
7 |
agcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttatt |
79 |
Q |
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| T |
41101932 |
agcaagctactgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcacatctgagttatt |
41101860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 41101862 - 41101817
Alignment:
| Q |
122 |
attcaagcattgtattttgtgatagtcaaagtggcacccaacttgc |
167 |
Q |
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| T |
41101862 |
attcaagcattgtattttgtgatagtcaaagtggcatccaacttgc |
41101817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 4133439 - 4133532
Alignment:
| Q |
33 |
gcagaggctgaatacagggccattgctgccctcacatctgagttattgt---gacatagacaatttactcacagctttagatgttattgttgatt |
124 |
Q |
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| T |
4133439 |
gcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcggcatagacaa-ttattcagagcttttgttgttattgttgatt |
4133532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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