View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1592-INSERTION-10 (Length: 462)

Name: NF1592-INSERTION-10
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1592-INSERTION-10
NF1592-INSERTION-10
[»] chr2 (24 HSPs)
chr2 (133-387)||(31568569-31568834)
chr2 (201-273)||(31567875-31567948)
chr2 (8-86)||(31568443-31568522)
chr2 (201-274)||(4286028-4286101)
chr2 (201-260)||(37893134-37893193)
chr2 (217-259)||(17911122-17911164)
chr2 (201-259)||(24541685-24541743)
chr2 (201-275)||(40220572-40220646)
chr2 (201-273)||(4286767-4286839)
chr2 (201-273)||(40221196-40221268)
chr2 (201-260)||(37893436-37893495)
chr2 (202-273)||(43313426-43313497)
chr2 (201-258)||(3795286-3795344)
chr2 (201-259)||(38779706-38779764)
chr2 (201-250)||(7780400-7780449)
chr2 (201-273)||(26544055-26544127)
chr2 (201-258)||(3803609-3803667)
chr2 (201-259)||(7779593-7779651)
chr2 (212-273)||(958686-958747)
chr2 (212-269)||(14456440-14456497)
chr2 (216-257)||(19846861-19846902)
chr2 (201-274)||(33416063-33416136)
chr2 (201-269)||(14002458-14002526)
chr2 (216-260)||(19848201-19848245)
[»] chr4 (28 HSPs)
chr4 (209-275)||(33410304-33410370)
chr4 (201-273)||(6790199-6790271)
chr4 (203-269)||(33409466-33409532)
chr4 (201-251)||(6790986-6791036)
chr4 (209-270)||(35075903-35075964)
chr4 (8-86)||(33410027-33410103)
chr4 (164-274)||(48578174-48578295)
chr4 (8-48)||(6790474-6790514)
chr4 (200-275)||(15995654-15995730)
chr4 (213-260)||(40335214-40335261)
chr4 (8-48)||(41882347-41882387)
chr4 (216-260)||(44010512-44010556)
chr4 (200-258)||(19069136-19069195)
chr4 (201-258)||(15999865-15999923)
chr4 (201-273)||(3403782-3403854)
chr4 (201-273)||(18884570-18884642)
chr4 (202-274)||(31242818-31242890)
chr4 (209-257)||(36003597-36003645)
chr4 (236-275)||(6791037-6791076)
chr4 (209-259)||(10753489-10753539)
chr4 (209-259)||(10967258-10967308)
chr4 (224-270)||(40334409-40334455)
chr4 (201-246)||(26791610-26791655)
chr4 (208-257)||(33051726-33051775)
chr4 (201-274)||(46439628-46439701)
chr4 (201-273)||(53777101-53777174)
chr4 (208-260)||(11084080-11084132)
chr4 (203-275)||(37562997-37563069)
[»] chr1 (21 HSPs)
chr1 (175-273)||(47586266-47586363)
chr1 (201-270)||(41459277-41459346)
chr1 (201-273)||(44470077-44470149)
chr1 (203-262)||(47585544-47585602)
chr1 (8-86)||(47586100-47586177)
chr1 (208-275)||(50037344-50037411)
chr1 (201-275)||(30910069-30910144)
chr1 (210-260)||(5844624-5844674)
chr1 (201-270)||(23603431-23603500)
chr1 (201-258)||(29356738-29356795)
chr1 (202-250)||(38878531-38878579)
chr1 (212-259)||(1167510-1167557)
chr1 (201-259)||(36183845-36183903)
chr1 (203-275)||(3943906-3943978)
chr1 (201-273)||(50036782-50036854)
chr1 (210-260)||(23604307-23604357)
chr1 (203-269)||(38879286-38879352)
chr1 (201-259)||(47661534-47661592)
chr1 (201-259)||(50269170-50269228)
chr1 (217-254)||(49697484-49697521)
chr1 (208-248)||(26606758-26606798)
[»] chr5 (13 HSPs)
chr5 (201-279)||(27532683-27532761)
chr5 (201-273)||(4906897-4906969)
chr5 (201-274)||(13563601-13563674)
chr5 (201-273)||(13838490-13838562)
chr5 (201-273)||(8539582-8539654)
chr5 (201-273)||(34080138-34080210)
chr5 (9-48)||(4906688-4906727)
chr5 (212-275)||(39742507-39742570)
chr5 (217-260)||(27531870-27531913)
chr5 (203-274)||(37814515-37814586)
chr5 (217-277)||(4434384-4434445)
chr5 (203-275)||(14280969-14281041)
chr5 (216-280)||(42098230-42098294)
[»] chr3 (22 HSPs)
chr3 (201-274)||(50604486-50604559)
chr3 (201-273)||(40871883-40871955)
chr3 (222-275)||(40871080-40871133)
chr3 (201-256)||(13743245-13743300)
chr3 (9-48)||(40871624-40871663)
chr3 (214-260)||(45506591-45506637)
chr3 (217-270)||(51326726-51326779)
chr3 (201-273)||(1294143-1294215)
chr3 (201-258)||(2743347-2743405)
chr3 (210-260)||(2831064-2831114)
chr3 (217-259)||(3112879-3112921)
chr3 (201-259)||(40872023-40872081)
chr3 (201-273)||(9429915-9429988)
chr3 (201-258)||(13747784-13747841)
chr3 (209-258)||(45507471-45507520)
chr3 (201-248)||(34648270-34648317)
chr3 (201-252)||(54857947-54857998)
chr3 (211-273)||(6928803-6928865)
chr3 (227-273)||(50957759-50957805)
chr3 (201-274)||(14043964-14044037)
chr3 (201-233)||(2830285-2830317)
chr3 (201-273)||(19842439-19842511)
[»] chr6 (10 HSPs)
chr6 (201-260)||(31496182-31496241)
chr6 (201-260)||(31501568-31501627)
chr6 (201-260)||(31516956-31517015)
chr6 (208-260)||(31516070-31516122)
chr6 (201-260)||(31480310-31480369)
chr6 (217-257)||(33052488-33052528)
chr6 (203-258)||(1608267-1608322)
chr6 (201-259)||(3177505-3177563)
chr6 (203-273)||(27641820-27641890)
chr6 (212-269)||(17596879-17596936)
[»] chr8 (16 HSPs)
chr8 (201-275)||(35555238-35555312)
chr8 (201-273)||(27411606-27411678)
chr8 (201-259)||(38331103-38331161)
chr8 (201-270)||(9892044-9892112)
chr8 (213-260)||(5680494-5680541)
chr8 (217-256)||(26237474-26237513)
chr8 (201-260)||(33482711-33482770)
chr8 (201-250)||(23508555-23508604)
chr8 (216-259)||(4174036-4174079)
chr8 (201-260)||(33483558-33483617)
chr8 (201-272)||(35555498-35555569)
chr8 (217-252)||(38330472-38330507)
chr8 (201-250)||(4395044-4395093)
chr8 (201-274)||(38134178-38134251)
chr8 (203-275)||(7344626-7344698)
chr8 (203-275)||(22014178-22014250)
[»] chr7 (12 HSPs)
chr7 (201-273)||(7974874-7974946)
chr7 (201-259)||(7953823-7953881)
chr7 (216-278)||(20354010-20354072)
chr7 (201-274)||(8113-8186)
chr7 (201-260)||(22640733-22640792)
chr7 (201-250)||(34139735-34139784)
chr7 (227-260)||(42808795-42808828)
chr7 (212-273)||(45350841-45350902)
chr7 (234-275)||(48589738-48589779)
chr7 (201-273)||(7004-7076)
chr7 (201-273)||(19072372-19072444)
chr7 (211-259)||(47669556-47669604)
[»] scaffold0143 (2 HSPs)
scaffold0143 (201-260)||(3906-3965)
scaffold0143 (201-260)||(3061-3120)
[»] scaffold0513 (1 HSPs)
scaffold0513 (201-274)||(8133-8206)
[»] scaffold0153 (1 HSPs)
scaffold0153 (201-273)||(17429-17502)
[»] scaffold2089 (1 HSPs)
scaffold2089 (215-252)||(392-429)
[»] scaffold0176 (1 HSPs)
scaffold0176 (201-250)||(660-709)
[»] scaffold0068 (1 HSPs)
scaffold0068 (203-247)||(46696-46740)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 133 - 387
Target Start/End: Original strand, 31568569 - 31568834
Alignment:
Q  133 tttcctcaattacatagatgttcctgcagttggttttcttcagtagttaactgcagccggatttattttt-----------aactgccgaggggtatttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||           |||||||||||||||||||    
T  31568569 tttcctcaattacatagatgttcctgcagttggttttcttcggtagttaactgcagccggatttatttttcctcgataattaactgccgaggggtatttt 31568668  T
Q  222 agtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaacaactaggtatgggcaataataatttggggtaaaatgtgttttatt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31568669 agtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaacaactaggtatgggcaataataatttggggtaaaatgtgttttatt 31568768  T
Q  322 tcaaaacaattagtgcgacaaatcataaatttacaaataaaggtacatattgttgatatagaatcc 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31568769 tcaaaacaattagtgcgacaaatcataaatttacaaataaaggtacatattgttgatatagaatcc 31568834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 31567948 - 31567875
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaac-aacatgtgtaatcagcaattctc 273  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  31567948 ttaactgccgagggatattttggtattttacacgtgtttctcagccaaactaacatgtgtaatcagcaattctc 31567875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 31568443 - 31568522
Alignment:
Q  8 gcatgaggcttgtagatatgaaaatgcatgtggtttcaata-nnnnnnnnncttctaattttgtatgagcatgcatcgac 86  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  31568443 gcatgaggcttgtagatatgaaaatgcatgtggtttcaatattttttttttcttctaattttgtatgagcatgcatcgac 31568522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 4286101 - 4286028
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||| |||||||| |||| |||||  |||||||||||||||||||||||||| | || |||||||||    
T  4286101 ttaactgccgatgggtatttgagtaatttactcgtgtttctcagccaaacaacatgtgtcaacaacaattctca 4286028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 37893193 - 37893134
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| |||||||||||||| ||  ||||||||||||||| ||||||||||||||||||    
T  37893193 ttaactaccgaggggtattttcgtcatttacatgtgtttcttagccaaacaacatgtgta 37893134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 17911164 - 17911122
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  17911164 attttagtattttacatgtgtttttcagccaaacaacatgtgt 17911122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 24541743 - 24541685
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||| ||  ||||||||||||||||||||||| |||||||||||||| ||||    
T  24541743 ttaactgccgaaggacattttagtattttacatgtgtttttcagccaaacaacacgtgt 24541685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 40220646 - 40220572
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||||||| ||||||  ||| |||||  |||||||||||||||||||||||||| | || ||||||||||    
T  40220646 ttaactgccgaggagtatttgggtaatttactagtgtttctcagccaaacaacatgtgtcaacaacaattctcaa 40220572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 4286767 - 4286839
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||| |||||||||||| |||| |||||  |||||||||||||||| ||||||||| | || ||||||||    
T  4286767 ttaactgtcgaggggtatttgagtaatttactagtgtttctcagccaaagaacatgtgtcaacaacaattctc 4286839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 40221196 - 40221268
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||||||| ||||| |||| |||||  |||| ||||||||||| ||||||||| | |||||||||||    
T  40221196 ttaactgccgagggatatttaagtaatttactcgtgtatctcagccaaagaacatgtgtcaacagcaattctc 40221268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 37893436 - 37893495
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| ||||| ||||||||  | |||||||||||||||| ||||||||||||||||||    
T  37893436 ttaactaccgagtggtattttcatcttttacatgtgtttcttagccaaacaacatgtgta 37893495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 43313426 - 43313497
Alignment:
Q  202 taactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||| |||| ||||||| |||| |||||  |||||||||||||||||||||||||  | |||||||||||    
T  43313426 taactgtcgagaggtatttgagtaatttactcgtgtttctcagccaaacaacatgtgccaacagcaattctc 43313497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 3795344 - 3795286
Alignment:
Q  201 ttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||||||||| ||||  |||| ||||| ||||||||||||||||||||||||||    
T  3795344 ttaactgccgaggggatattcaagtaatttacttgtgtttctcagccaaacaacatgtg 3795286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 38779706 - 38779764
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||||||||||| |||||| || ||| ||||||||||||||||||||| | ||||||    
T  38779706 ttaactgccgagggatattttcgtctttcacatgtgtttctcagccaaaccaaatgtgt 38779764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 7780400 - 7780449
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaac 250  Q
    |||||| |||||||| ||||| || |||||||||||||||||||||||||    
T  7780400 ttaactaccgaggggcattttcgtcttttacatgtgtttctcagccaaac 7780449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 26544055 - 26544127
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||||| |||||||   || |||||  |||||||||||||||||||||||||| | || ||||||||    
T  26544055 ttaactgccgagaggtatttggataatttactcgtgtttctcagccaaacaacatgtgtcaacaacaattctc 26544127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 3803609 - 3803667
Alignment:
Q  201 ttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||||| ||| |||||  ||| ||||| ||||||||||||||||||||||||||    
T  3803609 ttaactgccgatgggatatttgggtaatttacttgtgtttctcagccaaacaacatgtg 3803667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 7779651 - 7779593
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||| || ||||||  | ||||||||||||||||||||||||| | ||||||    
T  7779651 ttaactgccgaaggatattttcatcttttacatgtgtttctcagccaaaccaaatgtgt 7779593  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 958686 - 958747
Alignment:
Q  212 ggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||| |||||||||  |||||||||||||  | ||||||||| | |||||||||||    
T  958686 ggggtattttggtattttactggtgtttctcagccttataacatgtgtgaacagcaattctc 958747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 14456497 - 14456440
Alignment:
Q  212 ggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaat 269  Q
    |||||||||| |||||||||  ||||||||||||||||||  |||||| | |||||||    
T  14456497 ggggtattttggtattttactggtgtttctcagccaaacataatgtgtcaacagcaat 14456440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 19846902 - 19846861
Alignment:
Q  216 tattttagtattttacatgtgtttctcagccaaacaacatgt 257  Q
    |||||| || |||||||| |||||||||||||||||||||||    
T  19846902 tattttcgtcttttacatatgtttctcagccaaacaacatgt 19846861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 33416136 - 33416063
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||| |||||||| ||||  ||||  |||||| |||||||||| | | |||||| ||||||||||||    
T  33416136 ttaactgccgaagggtatttgagtaaattactcgtgtttttcagccaaaccaaacgtgtaaacagcaattctca 33416063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 14002526 - 14002458
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaat 269  Q
    ||||||||||||||  |||| |||| |||||  ||||||||||||||||| | |||||| | |||||||    
T  14002526 ttaactgccgagggacatttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacagcaat 14002458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 19848201 - 19848245
Alignment:
Q  216 tattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| || |||||||||||||||||| ||||||||||| ||||    
T  19848201 tatttttgtcttttacatgtgtttctcaaccaaacaacatatgta 19848245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 33410304 - 33410370
Alignment:
Q  209 cgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410304 cgaggggtattttggtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 33410370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 6790271 - 6790199
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  6790271 ttaactgccgaagggtattttagtattttacatgtgtttcacagccaaacaccatgtgtcatcagcaattctc 6790199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 33409532 - 33409466
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaat 269  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  33409532 aactgccgaggggtattttggtattttacatgtgtttctcagccaaacaacacgtgtaatcaacaat 33409466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 6790986 - 6791036
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaaca 251  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6790986 ttaactgtcgaggggtattttagtattttacatgtgtttctcagccaaaca 6791036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 35075964 - 35075903
Alignment:
Q  209 cgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaatt 270  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||  ||||||||    
T  35075964 cgaggggtattttcgtcttttacatgtgtttctcagccaaacaacatgtgtatacagcaatt 35075903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 33410027 - 33410103
Alignment:
Q  8 gcatgaggcttgtagatatgaaaatgcatgtggtttcaatannnnnnnnncttctaattttgtatgagcatgcatcgac 86  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  33410027 gcatgaggcttgtagatatgaaaatgcatgtggtttcaatatttttttt--ttctaattttgtatgagcatgcatcgac 33410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 48578174 - 48578295
Alignment:
Q  164 ggttttcttcagtagttaactgcagccggatttattttt-----------aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaa 252  Q
    |||||||||| |||||||||||||||||| |||||||||           |||| ||||| |||||||| || |||||||||||||||||| ||||||||    
T  48578174 ggttttcttcggtagttaactgcagccggttttattttttctcggcacttaactaccgagaggtattttcgtcttttacatgtgtttctcatccaaacaa 48578273  T
Q  253 catgtgtaatcagcaattctca 274  Q
    ||||||||  || |||||||||    
T  48578274 catgtgtatacaacaattctca 48578295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 6790514 - 6790474
Alignment:
Q  8 gcatgaggcttgtagatatgaaaatgcatgtggtttcaata 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6790514 gcatgaggcttgtagatatgaaaatgcatgtggtttcaata 6790474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 15995730 - 15995654
Alignment:
Q  200 tttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    |||||||||||||||| |||||  ||| ||||| ||||||||||||||||||||||||||  | |||||||||||||    
T  15995730 tttaactgccgagggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacagcaattctcaa 15995654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 40335214 - 40335261
Alignment:
Q  213 gggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  40335214 gggtattttcgtcttttacatgtgtttctcagccaaacaacatgtgta 40335261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 41882347 - 41882387
Alignment:
Q  8 gcatgaggcttgtagatatgaaaatgcatgtggtttcaata 48  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  41882347 gcatgaggcttgtagatctgaaaatgcatgtggtttcaata 41882387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 44010556 - 44010512
Alignment:
Q  216 tattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  44010556 tattttcgtattttacatgtatttctcagccaaacaacatgtgta 44010512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 19069195 - 19069136
Alignment:
Q  200 tttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    |||||||||||||||| |||||  ||| ||||| ||||||||||||||||||||||||||    
T  19069195 tttaactgccgagggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtg 19069136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 15999865 - 15999923
Alignment:
Q  201 ttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||||||||| |||||  ||| ||||| ||||||||||||||||||||||||||    
T  15999865 ttaactgccgagggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtg 15999923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 3403854 - 3403782
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||| ||||||||  ||| ||||| ||| |||||||||||||||||| |||  | |||||||||||    
T  3403854 ttaactgccgaagggtatttgcgtaatttacttgtatttctcagccaaacaacaagtgggaacagcaattctc 3403782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 18884570 - 18884642
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||| |||| |||| |||||  ||||||||||||||||| | |||||| | || ||||||||    
T  18884570 ttaactgccgaggggcatttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacatcaattctc 18884642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 31242818 - 31242890
Alignment:
Q  202 taactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||| |||| ||||||||| || |||||||||||||||||||||     |||||||||| ||||||||||||    
T  31242818 taactaccgaagggtattttcgtcttttacatgtgtttctcagccttctcacatgtgtaaacagcaattctca 31242890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 36003645 - 36003597
Alignment:
Q  209 cgaggggtattttagtattttacatgtgtttctcagccaaacaacatgt 257  Q
    ||||| ||||||| || |||||||||||||| |||||||||||||||||    
T  36003645 cgaggagtattttcgtcttttacatgtgtttttcagccaaacaacatgt 36003597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 6791037 - 6791076
Alignment:
Q  236 gtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  6791037 gtttctcagtcaaacaacatgtgtcatcagcaattctcaa 6791076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 10753489 - 10753539
Alignment:
Q  209 cgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||||||||||||||   ||||||||||||| ||||| ||||||    
T  10753489 cgaggggtattttagtattttattcgtgtttctcagcctaacaagatgtgt 10753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 10967258 - 10967308
Alignment:
Q  209 cgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||||||||||||||   ||||||||||||| ||||| ||||||    
T  10967258 cgaggggtattttagtattttattcgtgtttctcagcctaacaagatgtgt 10967308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 40334455 - 40334409
Alignment:
Q  224 tattttacatgtgtttctcagccaaacaacatgtgtaatcagcaatt 270  Q
    |||||||||||| | ||||||||||||||||| ||| ||||||||||    
T  40334455 tattttacatgtatatctcagccaaacaacatctgtcatcagcaatt 40334409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 26791655 - 26791610
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagcc 246  Q
    |||||| |||| ||||||||| || |||||||||||||||||||||    
T  26791655 ttaactaccgaagggtattttcgtcttttacatgtgtttctcagcc 26791610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 33051726 - 33051775
Alignment:
Q  208 ccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgt 257  Q
    ||||| ||||||| | || ||||| |||||||||||||||||||||||||    
T  33051726 ccgagtggtatttgaataatttacttgtgtttctcagccaaacaacatgt 33051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 46439628 - 46439701
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    |||||| |||| || |||||| |||||||||  ||||||||||||| ||||| |||||| | || |||||||||    
T  46439628 ttaactaccgatggatattttggtattttactcgtgtttctcagcctaacaagatgtgtcaacaacaattctca 46439701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 53777174 - 53777101
Alignment:
Q  201 ttaactgccg-aggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||| ||||| ||||| || ||||||  |||||||||||||  | ||||||||||| |||||||||||    
T  53777174 ttaactgccgcaggggcattttcgtcttttactagtgtttctcagccttataacatgtgtaaacagcaattctc 53777101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 11084080 - 11084132
Alignment:
Q  208 ccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||||||||||| || ||||| ||||||||   ||||||||||||||||||    
T  11084080 ccgaggggtattttcgtcttttaaatgtgttttcaagccaaacaacatgtgta 11084132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 37563069 - 37562997
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||| ||| ||||| |||||||||  ||||  | |||||||||||||||||  | |||||||||||||    
T  37563069 aactgccgaagggcattttcgtattttactcgtgtgacacagccaaacaacatgtgggaacagcaattctcaa 37562997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 47586266 - 47586363
Alignment:
Q  175 gtagttaactgcagccggatttatttttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||||||| ||  |||||||||  ||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47586266 gtagttaactgcagtcgattttatttttt-ctgtcgaggagtatttttgaattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 47586363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 41459277 - 41459346
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaatt 270  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  41459277 ttaactgtcgaggggtattttggtattttacatgtgtttctcagccaaacaacatgtgttatcaacaatt 41459346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 44470077 - 44470149
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||||||||   || |||| |||||||||||||||||||||||||||| | |||||||||||    
T  44470077 ttaactgccgaggggtatttggataatttaaatgtgtttctcagccaaacaacatgtgtcaacagcaattctc 44470149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 47585602 - 47585544
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaat 262  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  47585602 aactgcctaggggtattttggtattttacatgtgtttctca-ccaaacaacatgtgtaat 47585544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 47586100 - 47586177
Alignment:
Q  8 gcatgaggcttgtagatatgaaaatgcatgtggtttcaatannnnnnnnncttctaattttgtatgagcatgcatcgac 86  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  47586100 gcatgaggcttgtagatatgaaaatgcatgtggtttcaatattttttttt-ttctaattttgtatgagcatgcatcgac 47586177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 50037344 - 50037411
Alignment:
Q  208 ccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    |||| |||||||||  | |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  50037344 ccgaagggtatttttatcttttacatgtgtttctcagccaaacaacatgtgtatacagcaattctcaa 50037411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 30910069 - 30910144
Alignment:
Q  201 ttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||||||||| |||||  ||| ||||| ||||||||||||||||||||||||||  | |||||||||||||    
T  30910069 ttaactgccgagggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacagcaattctcaa 30910144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 5844674 - 5844624
Alignment:
Q  210 gaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  5844674 gaggggtattttcgacttttacatgtgtttctcagccaaacaacatgtgta 5844624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 23603500 - 23603431
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaatt 270  Q
    |||||| | |||||||||||| || ||||| |||||||||||||||||||| ||||||||  ||||||||    
T  23603500 ttaactactgaggggtattttcgtcttttatatgtgtttctcagccaaacagcatgtgtacacagcaatt 23603431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 29356738 - 29356795
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||||||||||||||   || ||||| ||||||||||||||||||||||||||    
T  29356738 ttaactgccgaggggtatttggataatttacttgtgtttctcagccaaacaacatgtg 29356795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 38878579 - 38878531
Alignment:
Q  202 taactgccgaggggtattttagtattttacatgtgtttctcagccaaac 250  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||    
T  38878579 taactgccgagaggtattttcgtcttttacatgtgtttctcagccaaac 38878531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 1167557 - 1167510
Alignment:
Q  212 ggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  1167557 ggggtattttggtattttacttgtgtttctcagccaaaccacatgtgt 1167510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 36183903 - 36183845
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||| ||||  |||||||| || ||||||||||||||||||||||| ||||||||||    
T  36183903 ttaactaccgaaaggtattttcgttttttacatgtgtttctcagccaatcaacatgtgt 36183845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 3943978 - 3943906
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||| ||||||||| |||||||||  ||||  | ||||||||||||||||| || ||||||| |||||    
T  3943978 aactgccgaagggtattttggtattttactcgtgtggcacagccaaacaacatgtggaaacagcaatactcaa 3943906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 50036854 - 50036782
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||  |||| |||| ||||| |||||||||||||||||  | |||||| | |||||||||||    
T  50036854 ttaactgccgagggacatttgagtaatttacttgtgtttctcagccaaatcaaatgtgtcaacagcaattctc 50036782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 23604307 - 23604357
Alignment:
Q  210 gaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||| ||||||| || |||||||||||||| | ||||||||||||||||||    
T  23604307 gaggagtattttcgtcttttacatgtgtttttgagccaaacaacatgtgta 23604357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 38879286 - 38879352
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaat 269  Q
    ||||||||| || ||||||| |||||||||||||||| |||| |||| || |||||| | |||||||    
T  38879286 aactgccgaaggatattttaatattttacatgtgtttatcagtcaaataagatgtgtcaacagcaat 38879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 47661534 - 47661592
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||| ||||||| |||||| |||||||||  ||||||||||||| ||||| ||||||    
T  47661534 ttaactaccgagggatattttggtattttactcgtgtttctcagcctaacaagatgtgt 47661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 50269170 - 50269228
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||| ||||||||||||||  | ||||||  ||||||||||||||||| ||||||||    
T  50269170 ttaactaccgaggggtattttcatcttttactcgtgtttctcagccaaaccacatgtgt 50269228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 49697521 - 49697484
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaaca 254  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  49697521 attttagtattttacatgtgttttttagccaaacaaca 49697484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 26606798 - 26606758
Alignment:
Q  208 ccgaggggtattttagtattttacatgtgtttctcagccaa 248  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  26606798 ccgaggggtattttggtattttactcgtgtttctcagccaa 26606758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 27532683 - 27532761
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaacaac 279  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||    
T  27532683 ttaactgtcgaggggtattttggtattttacatgtgtttctcatccaaacaacatgtgtcatcagcaattttcaccaac 27532761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 4906897 - 4906969
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||| |||||||||||||    
T  4906897 ttaactgccgaggggtattttggtattttccatgtgtttctcggccaaataacatgtgttatcagcaattctc 4906969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 13563674 - 13563601
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  13563674 ttaactgccgaggggtatttgggtaatttacatgtgtttctcagccaaacaacatgtgggaacagcaattctca 13563601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 13838490 - 13838562
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||||||||  ||| |||||  |||||||||||||||||||||||||| | |||||||||||    
T  13838490 ttaactgccgaggggtatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaacagcaattctc 13838562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 8539582 - 8539654
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||||   |||||| | |||||||||||    
T  8539582 ttaactgccgaggggtatttgagtaatttacttgtgtttctcagccaaactcaatgtgtcaacagcaattctc 8539654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 34080138 - 34080210
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||||||||  ||| ||||| ||||||| |||||||| |||||||||| | |||||||||||    
T  34080138 ttaactgccgaggggtatttgggtaatttacttgtgtttatcagccaaccaacatgtgtcaacagcaattctc 34080210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 4906688 - 4906727
Alignment:
Q  9 catgaggcttgtagatatgaaaatgcatgtggtttcaata 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4906688 catgaggcttgtagatatgaaaatgcatgtggtttcaata 4906727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 39742570 - 39742507
Alignment:
Q  212 ggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    |||||||||| |||||||||  |||||||||||||  | ||||||||||| |||||||||||||    
T  39742570 ggggtattttggtattttactggtgtttctcagccctataacatgtgtaaacagcaattctcaa 39742507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 27531913 - 27531870
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    ||||| || ||||| |||||||||||||||||||||||||||||    
T  27531913 attttcgtcttttatatgtgtttctcagccaaacaacatgtgta 27531870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 37814586 - 37814515
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||| ||||||||| |||||||||  ||||  | |||||||||||||||||  | ||||||||||||    
T  37814586 aactgccgaagggtatttttgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctca 37814515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 4434384 - 4434445
Alignment:
Q  217 attttagtattttacatgtg-tttctcagccaaacaacatgtgtaatcagcaattctcaaca 277  Q
    |||||||||||||||||||| ||| | ||||||||||||||||| | || |||| |||||||    
T  4434384 attttagtattttacatgtgtttttttagccaaacaacatgtgtcaacaacaatactcaaca 4434445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14280969 - 14281041
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||| ||||||||| |||||||||  ||||  | |||||||||||||||||  | ||||||| |||||    
T  14280969 aactgccgaagggtattttggtattttactcgtgtgacacagccaaacaacatgtgggaacagcaatactcaa 14281041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 42098294 - 42098230
Alignment:
Q  216 tattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaacaact 280  Q
    |||||| |||||||||   ||||||||||||  | ||||||||||| ||||||||||||| ||||    
T  42098294 tattttggtattttactgatgtttctcagccttataacatgtgtaaacagcaattctcaaaaact 42098230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 50604486 - 50604559
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||    
T  50604486 ttaactgctgaagggtattttagtattttacatgtgtttttcagccaaacaacatgtgtcaacagcaatactca 50604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 40871883 - 40871955
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  40871883 ttaactgccaaggggtattttgatattttacatgtgtttctcagccaaacaacatgtatcatcaacaattctc 40871955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 40871133 - 40871080
Alignment:
Q  222 agtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  40871133 agtattttacatgtgtttctcagccaaacaacatatgtcatcagcaattctcaa 40871080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 13743300 - 13743245
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatg 256  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  13743300 ttaactgccgaggggtatttgggtaatttacatgtgtttctcagccaaacaacatg 13743245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 40871624 - 40871663
Alignment:
Q  9 catgaggcttgtagatatgaaaatgcatgtggtttcaata 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40871624 catgaggcttgtagatatgaaaatgcatgtggtttcaata 40871663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 45506637 - 45506591
Alignment:
Q  214 ggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  45506637 ggtatttttgtcttttacatgtgtttctcagccaaacaacatgtgta 45506591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 51326726 - 51326779
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaatt 270  Q
    ||||| || |||||||||||||||||||||||||||||||||||  ||||||||    
T  51326726 attttcgtcttttacatgtgtttctcagccaaacaacatgtgtatacagcaatt 51326779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 1294143 - 1294215
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||||||||  ||| |||||  ||||||||||| |||||||||||||| | || ||||||||    
T  1294143 ttaactgccgaggggtatttgggtaatttactcgtgtttctcagtcaaacaacatgtgtcaacaacaattctc 1294215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 2743405 - 2743347
Alignment:
Q  201 ttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||||||||| |||||  ||| ||||| ||||||||||||||||||||||||||    
T  2743405 ttaactgccgaggggatatttgggtaatttacttgtgtttctcagccaaacaacatgtg 2743347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2831064 - 2831114
Alignment:
Q  210 gaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    ||||| |||||| || |||||||| ||||||||||||||||||||||||||    
T  2831064 gagggatattttcgtcttttacatatgtttctcagccaaacaacatgtgta 2831114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 3112879 - 3112921
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  3112879 attttaatattttacatgtgtttttcagccaaacaacatgtgt 3112921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 40872081 - 40872023
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||| |||||||||||||| || ||||||||||||||||| ||||||| | ||||||    
T  40872081 ttaactaccgaggggtattttcgtcttttacatgtgtttctctgccaaaccaaatgtgt 40872023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 9429915 - 9429988
Alignment:
Q  201 ttaactgccgagggg-tattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||| |||||  ||| ||||| ||||||||||||||||||| ||||||  | |||||||||||    
T  9429915 ttaactgccgagggggtatttgcgtaatttacttgtgtttctcagccaaacaccatgtgggaacagcaattctc 9429988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 13747784 - 13747841
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||||||| ||||||   || ||||||||||||| ||||||||||||||||||    
T  13747784 ttaactgccgaggagtatttggataatttacatgtgtttatcagccaaacaacatgtg 13747841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 45507471 - 45507520
Alignment:
Q  209 cgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    |||||| |||||| || ||||| |||||||||||||||||||||||||||    
T  45507471 cgagggatattttcgtcttttatatgtgtttctcagccaaacaacatgtg 45507520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 34648270 - 34648317
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaa 248  Q
    |||||||| ||||||||||| ||||  |||||||||||||||||||||    
T  34648270 ttaactgctgaggggtatttgagtaaattacatgtgtttctcagccaa 34648317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 54857947 - 54857998
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaa 252  Q
    |||| ||| |||||||||||| || ||||||||||||||||||| |||||||    
T  54857947 ttaaatgctgaggggtatttttgtcttttacatgtgtttctcagtcaaacaa 54857998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 6928803 - 6928865
Alignment:
Q  211 aggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||| |||||||||  ||||||||||||| ||||| |||||| | || ||||||||    
T  6928803 aggggtattttggtattttactcgtgtttctcagcctaacaagatgtgtcaacaacaattctc 6928865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 50957759 - 50957805
Alignment:
Q  227 tttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||| ||||||||||||||||||||||||||  | |||||||||||    
T  50957759 tttacttgtgtttctcagccaaacaacatgtgggaacagcaattctc 50957805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 14043964 - 14044037
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||| ||||||||  |||  ||||  ||||||||||||||||| | |||||||| || |||||||||    
T  14043964 ttaactgccgaagggtatttgggtaaattactcgtgtttctcagccaaactaaatgtgtaaacaacaattctca 14044037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 2830317 - 2830285
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacat 233  Q
    ||||||||||||||||||||| |||||||||||    
T  2830317 ttaactgccgaggggtattttggtattttacat 2830285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 19842511 - 19842439
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||| ||| |||| | || ||||| |||||||||||| ||||| | |||||| | |||||||||||    
T  19842511 ttaactgccgaagggcatttgaataatttacttgtgtttctcagacaaaccaaatgtgtgaacagcaattctc 19842439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 31496241 - 31496182
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  31496241 ttaactaccgaagggtatttttgtcttttacatgtgtttctcagccaaacaacatgtgta 31496182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 31501627 - 31501568
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  31501627 ttaactaccgaagggtatttttgtcttttacatgtgtttctcagccaaacaacatgtgta 31501568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 31516956 - 31517015
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| ||||||||||||||  | |||||||||||||||| ||||||||||||||||||    
T  31516956 ttaactaccgaggggtattttcatcttttacatgtgtttcttagccaaacaacatgtgta 31517015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 31516122 - 31516070
Alignment:
Q  208 ccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||| ||||    
T  31516122 ccgaggggtatttttatcttttacatgtgtttctcagccaaacaacatatgta 31516070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 31480369 - 31480310
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| |||| ||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  31480369 ttaactaccgaagggtatttttgacttttacatgtgtttctcggccaaacaacatgtgta 31480310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 33052528 - 33052488
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaacatgt 257  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  33052528 attttcgttttttacatgtgtttctcagccaaacaacatgt 33052488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 1608322 - 1608267
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtg 258  Q
    ||||||||| ||||||||| |||||||||| ||||  | |||||||||||||||||    
T  1608322 aactgccgaagggtattttggtattttacacgtgtggcacagccaaacaacatgtg 1608267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 3177563 - 3177505
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||||||| | | |||||| || ||||||||||||||||||||||||| | ||||||    
T  3177563 ttaactgccgcgagatatttttgttttttacatgtgtttctcagccaaaccaaatgtgt 3177505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 27641820 - 27641890
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||| ||||| |||||||||  ||||  | |||||||||||||||||  | |||||||||||    
T  27641820 aactgccgaggggcattttggtattttactagtgtggcacagccaaacaacatgtgggaacagcaattctc 27641890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 17596936 - 17596879
Alignment:
Q  212 ggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaat 269  Q
    |||||||||| |||||||||  ||||||||||||||||||  |||||| | |||||||    
T  17596936 ggggtattttggtattttactggtgtttctcagccaaacatgatgtgtcaacagcaat 17596879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 35555238 - 35555312
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||| |||||| | || ||||||||||    
T  35555238 ttaactaccgaggggtattttggtattttacttgtgtttctcagcctaacaagatgtgtcaacaacaattctcaa 35555312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 27411678 - 27411606
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||||||| | |||||| | || ||||||||    
T  27411678 ttaactgtcgaggggtattttcgtcttttacatgtgtttctcagccaaaccaaatgtgtcaacaacaattctc 27411606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 38331103 - 38331161
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    |||||||| || ||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  38331103 ttaactgcagaagggcattttggtattttacatgtgtttctcagccaaacaagatgtgt 38331161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 9892112 - 9892044
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaatt 270  Q
    ||||||||||| || |||||| |||||||||||||||||||| |||||| ||||||||||  ||||||||    
T  9892112 ttaactgccgaagg-tattttggtattttacatgtgtttctcggccaaataacatgtgtatacagcaatt 9892044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 5680494 - 5680541
Alignment:
Q  213 gggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||    
T  5680494 gggtatttttgtcttttacatgtgtttctcagccaaagaacatgtgta 5680541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 26237513 - 26237474
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaacatg 256  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26237513 attttagtattttacatgtgtttttcagccaaacaacatg 26237474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 33482770 - 33482711
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| ||||  |||||||| || ||||||||||||||||||||||||||| |||||||    
T  33482770 ttaactaccgaaaggtattttcgtcttttacatgtgtttctcagccaaacaatatgtgta 33482711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 23508604 - 23508555
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaac 250  Q
    |||||||||||||||||||||  |||||||||||| || |||||||||||    
T  23508604 ttaactgccgaggggtattttcatattttacatgtattcctcagccaaac 23508555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 4174079 - 4174036
Alignment:
Q  216 tattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||    
T  4174079 tattttagtattttacccgtgtttctcagccaaaccacatgtgt 4174036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 33483558 - 33483617
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| | ||||| |||||| || |||||||||||||||||| |||||| |||||||||    
T  33483558 ttaactactgagggatattttcgtcttttacatgtgtttctcaaccaaacgacatgtgta 33483617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 35555498 - 35555569
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattct 272  Q
    |||||| |||||||||||||| |||||||||  ||||||||||| | ||||| |||||| | || |||||||    
T  35555498 ttaactaccgaggggtattttggtattttactcgtgtttctcagtctaacaagatgtgttaacaacaattct 35555569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 38330507 - 38330472
Alignment:
Q  217 attttagtattttacatgtgtttctcagccaaacaa 252  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38330507 attttagtattttacatgtgtttctcaaccaaacaa 38330472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 4395044 - 4395093
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaac 250  Q
    |||||||||||| |  ||||| || |||||||||||||||||||||||||    
T  4395044 ttaactgccgagagacatttttgtcttttacatgtgtttctcagccaaac 4395093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 38134178 - 38134251
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||| ||| |||| |||| ||||| ||||| |||||||||||| | |||||||| || |||| ||||    
T  38134178 ttaactgccgatgggcatttgagtaatttacttgtgtctctcagccaaaccaaatgtgtaaacaacaatactca 38134251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 7344626 - 7344698
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||| ||||||||| |||||||||  ||||  | |||||||||||||||||  | ||||||| |||||    
T  7344626 aactgccgaagggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaatactcaa 7344698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 22014250 - 22014178
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    ||||||||| ||| ||||| |||||||||  ||||  | |||||||||||||||||  | |||||||||||||    
T  22014250 aactgccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctcaa 22014178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 7974946 - 7974874
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||||||||  ||| |||||  |||||||||||||||||||||||||| | || ||||||||    
T  7974946 ttaactgccgaggggtatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaacatcaattctc 7974874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 7953823 - 7953881
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||| | ||||||    
T  7953823 ttaactgccgaggggtattttcgtcttttacatgtgtttatcagccaaaccaaatgtgt 7953881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 20354010 - 20354072
Alignment:
Q  216 tattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaacaa 278  Q
    |||||| || |||||||||||||||||||||||| ||||||||||  || ||||| |||||||    
T  20354010 tattttcgtcttttacatgtgtttctcagccaaataacatgtgtatgcaacaattttcaacaa 20354072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 8113 - 8186
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||||||| |||| |||| ||||| |||||  | |||||||||||||||||  | ||||||||||||    
T  8113 ttaactgccgaggggcatttgagtaatttacttgtgtggcacagccaaacaacatgtgggaacagcaattctca 8186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 22640733 - 22640792
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| | ||| |||||||| |||||||| |||||||| |||||||||||||| |||||    
T  22640733 ttaactacagagaggtattttcgtattttatatgtgtttatcagccaaacaacacgtgta 22640792  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 34139735 - 34139784
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaac 250  Q
    ||||||||||||||| |||| |||| |||||  |||||||||||||||||    
T  34139735 ttaactgccgaggggcatttgagtaatttactcgtgtttctcagccaaac 34139784  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 42808795 - 42808828
Alignment:
Q  227 tttacatgtgtttctcagccaaacaacatgtgta 260  Q
    ||||| ||||||||||||||||||||||||||||    
T  42808795 tttacttgtgtttctcagccaaacaacatgtgta 42808828  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 45350902 - 45350841
Alignment:
Q  212 ggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||| |||||||||  ||||||||||| |  | ||||||||||| |||||||||||    
T  45350902 ggggtattttggtattttactggtgtttctcagtcttataacatgtgtaaacagcaattctc 45350841  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 48589779 - 48589738
Alignment:
Q  234 gtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 275  Q
    |||||||||||||||||||||||||| | || ||||||||||    
T  48589779 gtgtttctcagccaaacaacatgtgtcaacaacaattctcaa 48589738  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 7076 - 7004
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||||||||||| |||| |||| |||||  ||||  | |||||||||||||||||  | |||||||||||    
T  7076 ttaactgccgaggggcatttgagtaatttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 7004  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 19072444 - 19072372
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    ||||||| ||||||| |||| |||| |||||  ||||||||||||| ||| | |||||| | |||||||||||    
T  19072444 ttaactgtcgaggggcatttgagtaatttactcgtgtttctcagccgaaccaaatgtgtgaacagcaattctc 19072372  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 47669604 - 47669556
Alignment:
Q  211 aggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 259  Q
    ||||||||||| |||||||||  ||||||||||||| ||||| ||||||    
T  47669604 aggggtattttggtattttactcgtgtttctcagcctaacaaaatgtgt 47669556  T

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Target: scaffold0143 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 3906 - 3965
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| ||||  |||||||| || ||||||||||||||||||||||||||| |||||||    
T  3906 ttaactaccgaaaggtattttcgtcttttacatgtgtttctcagccaaacaatatgtgta 3965  T

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Target: scaffold0143; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 3120 - 3061
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgta 260  Q
    |||||| | ||||| |||||| || |||||||||||||||||| |||||| |||||||||    
T  3120 ttaactactgagggatattttcgtcttttacatgtgtttctcaaccaaacgacatgtgta 3061  T

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Target: scaffold0513 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 8206 - 8133
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctca 274  Q
    ||||||||||||| ||||||  ||| ||||| |||| ||||||||||||||||||| |  | ||||||||||||    
T  8206 ttaactgccgaggagtatttgggtaatttacttgtgattctcagccaaacaacatgcgggaacagcaattctca 8133  T

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Target: scaffold0153 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 17429 - 17502
Alignment:
Q  201 ttaactgccgaggggt-attttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctc 273  Q
    |||||||||||||||| ||||| || ||||||  |||||||||||||  | ||||||||||| |||||||||||    
T  17429 ttaactgccgaggggtcattttcgtcttttactagtgtttctcagccttataacatgtgtaaacagcaattctc 17502  T

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Target: scaffold2089 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 392 - 429
Alignment:
Q  215 gtattttagtattttacatgtgtttctcagccaaacaa 252  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  392 gtatttttgtattttacatgtgtttctcagcctaacaa 429  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 660 - 709
Alignment:
Q  201 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaac 250  Q
    ||||||||||||||| |||| |||| |||||  |||||||||||||||||    
T  660 ttaactgccgaggggcatttgagtaatttactcgtgtttctcagccaaac 709  T

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Target: scaffold0068 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 46740 - 46696
Alignment:
Q  203 aactgccgaggggtattttagtattttacatgtgtttctcagcca 247  Q
    ||||||||| | ||||||||||||||||| ||||||| |||||||    
T  46740 aactgccgaagagtattttagtattttacttgtgtttttcagcca 46696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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