View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592-INSERTION-2 (Length: 263)
Name: NF1592-INSERTION-2
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592-INSERTION-2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 21868287 - 21868542
Alignment:
| Q |
8 |
agatttccaaagtgcacaaagagattgtgatgaaaatgtatccaacttggcacccatgcttcatgaacatggatggggaacagctcaaaactttcattgg |
107 |
Q |
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| T |
21868287 |
agatttccaaagtgcacaaagagattgtgatgaaaatgtatccaacttggcacccatgcttcatgaacatggatggggaacaactcaaaactttcattgg |
21868386 |
T |
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| Q |
108 |
tattctagatggcaagattcaagcttgtaatcacaaaattagcatgctaaagaaaatgcaacaaagtactgaaaatggtttcatgctaaacactactcag |
207 |
Q |
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| T |
21868387 |
tattctagatgccaagattcaagcttgtaatcacaaaattagcatgctaaagaaaatgcaacaaagaactgaaaatggtttcatgctaaacactactcag |
21868486 |
T |
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| Q |
208 |
atgtaaaatgtggctccaaagaatgttgtctccacacatttgaagccacttagtga |
263 |
Q |
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| T |
21868487 |
atgcaaaatgtggctccaaagaatgttgtctccacacatttgaagccacttagtga |
21868542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 21876160 - 21876326
Alignment:
| Q |
8 |
agatttccaaagtgcacaaagagattgtgatgaaaatgtatccaacttggcacccatgcttcatgaacatggatggggaacagctcaaaactttcattgg |
107 |
Q |
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| T |
21876160 |
agatttccaaagtacacaaagagatcttgatgaaaatgtatccaacttggcacccatgcttcatgaacatgaatggggaacaactcaaaactttcattgg |
21876259 |
T |
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| Q |
108 |
tattctagatggcaagattcaagcttgtaatcacaaaattagcatgctaaagaaaatgcaacaaagt |
174 |
Q |
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| T |
21876260 |
cattctaggtggcaagattcaagcttgcaagaaaaggattagcatgctgaagaaaatgcaagaaagt |
21876326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 21819148 - 21819001
Alignment:
| Q |
8 |
agatttccaaagtgcacaaagagattgtgatgaaaatgtatccaacttggcacccatgcttcatgaacatggatggggaacagctcaaaactttcattgg |
107 |
Q |
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| T |
21819148 |
agatttccaaagtgcagaaagagattgtgaagaacaagtatccaacttgggatccatgtttcattaacatggatggtgaacaactcaaagccttcactgc |
21819049 |
T |
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| Q |
108 |
tattctagatggcaagattcaagcttgtaatcacaaaattagcatgct |
155 |
Q |
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| T |
21819048 |
tattgtaaatgccaagattgaagcttgtgatcaaagaattagcatgct |
21819001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 52000098 - 52000138
Alignment:
| Q |
113 |
tagatggcaagattcaagcttgtaatcacaaaattagcatg |
153 |
Q |
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| T |
52000098 |
tagatgccaagattcaagcttgtaatcacaaaattaacatg |
52000138 |
T |
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