View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592-INSERTION-3 (Length: 322)
Name: NF1592-INSERTION-3
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592-INSERTION-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 116 - 322
Target Start/End: Original strand, 4045496 - 4045702
Alignment:
| Q |
116 |
attctctattgaaactcaatatcttcaacaacacttatacataaaataatgatcaggaagtcaatgnnnnnnnnnngtttcttgctctgaatgatcatgc |
215 |
Q |
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| T |
4045496 |
attctctattgaaactcaatttcttcaacaacacttatacataaaataatgatcaggaagtcaatgaaaaaaaaaagtttcttgctctgaatgatcatgc |
4045595 |
T |
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| Q |
216 |
caagaactaagtgcaacattattgttgttcatcttgaaggaatatccatggtgttttactactcatttcacataaatcataatatacttgagatcgatcg |
315 |
Q |
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| T |
4045596 |
caagaactaagtgcaacattattgttgttcatcttgaaggaatatccatggtgttttactactcatttcacataaatcataatatacttgagatcgatcg |
4045695 |
T |
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| Q |
316 |
agttgtt |
322 |
Q |
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| T |
4045696 |
agttgtt |
4045702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 4045014 - 4045089
Alignment:
| Q |
23 |
ccatttagttttgctatataatcttttataactctattttaatattcaatatcattgtaatattattgaaaatcctaaccatc |
105 |
Q |
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| T |
4045014 |
ccatttagttttgctatataat-------aactttattttaatattctatgtcattgtaatattcttgaaaaccctaaccatc |
4045089 |
T |
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