View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1592-INSERTION-4 (Length: 655)

Name: NF1592-INSERTION-4
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1592-INSERTION-4
NF1592-INSERTION-4
[»] chr3 (3 HSPs)
chr3 (11-301)||(8229442-8229732)
chr3 (299-504)||(8225945-8226152)
chr3 (500-644)||(8224477-8224621)
[»] chr8 (7 HSPs)
chr8 (12-655)||(19975291-19975925)
chr8 (12-655)||(21016908-21017542)
chr8 (419-655)||(27860447-27860682)
chr8 (50-182)||(27860092-27860224)
chr8 (216-324)||(27860229-27860340)
chr8 (63-252)||(19974836-19975016)
chr8 (63-252)||(21017817-21017997)
[»] chr4 (3 HSPs)
chr4 (414-655)||(5073972-5074213)
chr4 (415-644)||(10177070-10177298)
chr4 (59-101)||(10177632-10177674)
[»] scaffold0417 (3 HSPs)
scaffold0417 (414-642)||(4539-4767)
scaffold0417 (56-252)||(4916-5112)
scaffold0417 (284-324)||(4862-4902)
[»] chr5 (14 HSPs)
chr5 (417-574)||(38232609-38232766)
chr5 (414-519)||(25188113-25188218)
chr5 (418-519)||(25232073-25232174)
chr5 (418-519)||(25296231-25296332)
chr5 (554-655)||(25239945-25240046)
chr5 (554-655)||(25304098-25304199)
chr5 (567-655)||(25236389-25236477)
chr5 (567-655)||(25300549-25300637)
chr5 (555-643)||(25188228-25188316)
chr5 (106-199)||(38233008-38233101)
chr5 (438-547)||(26789097-26789206)
chr5 (414-478)||(21364142-21364206)
chr5 (555-643)||(25232184-25232271)
chr5 (555-643)||(25296342-25296429)
[»] chr6 (1 HSPs)
chr6 (554-622)||(21805614-21805682)
[»] chr1 (1 HSPs)
chr1 (464-645)||(34516419-34516602)
[»] scaffold0013 (1 HSPs)
scaffold0013 (417-486)||(98491-98560)
[»] scaffold0291 (1 HSPs)
scaffold0291 (417-486)||(16690-16759)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 8229732 - 8229442
Alignment:
Q  11 tcatgtaatggtgactgttccctaactggctcaacttaaacgtgatgtaacgacatatgaaatgaagtctgagacttttcaatatgttgtggggctgtat 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  8229732 tcatgtaatggtgactgttgcctaactggctcaacttaaacgttatgtaaccacatatgaaatgaagtctgagacttttcaatatgttatggggctgtat 8229633  T
Q  111 caatagaaataacagaaatatgactctctacatgtccatcaatatggtctgctggctgctcatgccgagtaacgagtacctcaacgctctctgcctgtct 210  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  8229632 caatataaataacataaatatgactctctacatgtccatcaatatggtctgctggctgctcatgctgagtaatgggtacctcaacgctctctgcctgtct 8229533  T
Q  211 gtctccaacctcaattccatggtctgcgtgcacctcctgctggtggggaggagaagcagcttgtatcgaagcatcaaaagctttagaggag 301  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8229532 gtctccaacctcaattccatggtttgcgtgcacctcctgctggtggggaggagaagcagcttgtatcgaagcatcaaaagctttagaggag 8229442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 299 - 504
Target Start/End: Complemental strand, 8226152 - 8225945
Alignment:
Q  299 gagcctatgtcggaggggttatccttcttttcatcctataacggct-gtctctaggaatgttcagttttt-ccccttatcaacgagaagaatcttctctt 396  Q
    ||||||||||| || || |||||||||||| |||||||  | || | || |||| ||||||||||||||| ||||||||||||| ||||||||||||||     
T  8226152 gagcctatgtcagaaggattatccttctttccatcctagcatggattgtttctacgaatgttcagttttttccccttatcaacgggaagaatcttctctc 8226053  T
Q  397 ttttgtgtgcnnnnnnnggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgat 496  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  8226052 ttttgtgtgctttttttggatgtaaccaccggcaagatgttacattatggccaatagttttacagtgagtgcaaaattcaggcagtcccttgtattcaat 8225953  T
Q  497 ttccaccg 504  Q
    ||||||||    
T  8225952 ttccaccg 8225945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 500 - 644
Target Start/End: Complemental strand, 8224621 - 8224477
Alignment:
Q  500 caccggaaatgcataaccttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaat 599  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||    
T  8224621 caccgaaaatgcataaccttcccattccaccataacttcataaaaaatgttttcggtaagttctaaattcaccaagaccctggcatagtgactaaacaat 8224522  T
Q  600 atgtttttggtaacattatcaatcaacaacggtgtcccgatagcc 644  Q
    |||||||| |||||||||||||| ||||| ||| | |||||||||    
T  8224521 atgtttttagtaacattatcaattaacaatggtattccgatagcc 8224477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 6e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 12 - 655
Target Start/End: Original strand, 19975291 - 19975925
Alignment:
Q  12 catgtaatggtgactgttccctaactggctcaacttaaacgtgatgtaacgacatatgaaatgaagtctgagacttttcaatatgttgtggggctgtatc 111  Q
    ||||||||||||| |||| ||||||| ||||| |  | |||| |||| | | ||||||||| | |||||||||||||||||||||||||||| |||||||    
T  19975291 catgtaatggtgattgttgcctaactagctcatcagagacgttatgtcaagtcatatgaaacgtagtctgagacttttcaatatgttgtgggactgtatc 19975390  T
Q  112 aatagaaataacagaaatatgactctctacatgtccatcaatatggtctgctggctgctcatgccgagtaacgagtacctcaacgctctctgcctgtctg 211  Q
    |||||||||||                ||||||  ||||||||||||||| || ||||| |||| |||||||  ||| || |||||| | ||  ||| ||    
T  19975391 aatagaaataaa---------------tacatgcgcatcaatatggtctgatgactgctaatgctgagtaacaggtagcttaacgctatatgtgtgtatg 19975475  T
Q  212 tctccaacctcaattccatggtctgcgtgcacctcctgctgg--tggggaggagaagcagcttgtatcgaagcatcaaaagctttagaggagcctatgtc 309  Q
    | | |||||| |  |||||||||||||||||||||||||||   ||||||| |  ||| ||| |||||||||| |||||| ||||||||||||| ||| |    
T  19975476 tttgcaaccttagctccatggtctgcgtgcacctcctgctgacatggggagaaagagcggctcgtatcgaagcctcaaaatctttagaggagccaatgcc 19975575  T
Q  310 ggaggggttatcctt--cttttcatcctataacgg-ctgtctctaggaatgttcagtttttcccctt-atcaacgagaagaatcttctcttttttgtgtg 405  Q
     ||||| ||||||||  |||| ||||||     || |||   ||  ||| ||||||||||| ||||| || ||   |||||| |||||||| ||||| ||    
T  19975576 agagggattatcctttgctttccatccttgcgtggactgctactgtgaaagttcagttttttccctttattaattggaagaaccttctcttctttgtctg 19975675  T
Q  406 cnnnnnnnggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccgg 505  Q
            ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||  ||||| ||| |||||||    
T  19975676 attttttcggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagtgcaaaagtcaggcagcccctcatattcaattgccaccgg 19975775  T
Q  506 aaatgcataaccttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgttt 605  Q
    ||||||||||||||||| ||||||||||| ||| ||||||| ||| || ||||||||||| |||| ||| ||  ||||||| |||| ||||||| ||||     
T  19975776 aaatgcataaccttcccgttccaccataacttcttaaaaaaggttctcggaaaggtctaagtccatcaaaactttggcataatgaccaaacaatctgttc 19975875  T
Q  606 ttggtaacattatcaatcaacaacggtgtcccgatagccccagctatttc 655  Q
    || |||||||||||||| ||||| || || | ||||||||| ||||||||    
T  19975876 ttagtaacattatcaattaacaatggagttctgatagcccctgctatttc 19975925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 12 - 655
Target Start/End: Complemental strand, 21017542 - 21016908
Alignment:
Q  12 catgtaatggtgactgttccctaactggctcaacttaaacgtgatgtaacgacatatgaaatgaagtctgagacttttcaatatgttgtggggctgtatc 111  Q
    ||||||||||||| |||| ||||||| ||||| |  | |||| |||| | | ||||||||| | |||||||||||||||||||||||||||| |||||||    
T  21017542 catgtaatggtgattgttgcctaactagctcatcagagacgttatgtcaagtcatatgaaacgtagtctgagacttttcaatatgttgtgggactgtatc 21017443  T
Q  112 aatagaaataacagaaatatgactctctacatgtccatcaatatggtctgctggctgctcatgccgagtaacgagtacctcaacgctctctgcctgtctg 211  Q
    |||||||||||                ||||||  ||||||||||||||| || ||||| |||| |||||||  ||| || |||||| | ||  ||| ||    
T  21017442 aatagaaataaa---------------tacatgcgcatcaatatggtctgatgactgctaatgctgagtaacaggtagcttaacgctatatgtgtgtatg 21017358  T
Q  212 tctccaacctcaattccatggtctgcgtgcacctcctgctgg--tggggaggagaagcagcttgtatcgaagcatcaaaagctttagaggagcctatgtc 309  Q
    | | |||||| |  |||||||||||||||||||||||||||   ||||||| |  ||| ||| |||||||||| |||||| ||||||||||||| ||| |    
T  21017357 tttgcaaccttagctccatggtctgcgtgcacctcctgctgacatggggagaaagagcggctcgtatcgaagcctcaaaatctttagaggagccaatgcc 21017258  T
Q  310 ggaggggttatcctt--cttttcatcctataacgg-ctgtctctaggaatgttcagtttttcccctt-atcaacgagaagaatcttctcttttttgtgtg 405  Q
     ||||| ||||||||  |||| ||||||     || |||   ||  ||| ||||||||||| ||||| || ||   |||||| |||||||| ||||| ||    
T  21017257 agagggattatcctttgctttccatccttgcgtggactgctactgtgaaagttcagttttttccctttattaattggaagaaccttctcttctttgtctg 21017158  T
Q  406 cnnnnnnnggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccgg 505  Q
            ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||  ||||| ||| |||||||    
T  21017157 attttttcggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagtgcaaaagtcaggcagcccctcatattcaattgccaccgg 21017058  T
Q  506 aaatgcataaccttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgttt 605  Q
    ||||||||||||||||| ||||||||||| ||| ||||||| ||| || ||||||||||| |||| ||| ||  ||||||| |||| ||||||| ||||     
T  21017057 aaatgcataaccttcccgttccaccataacttcttaaaaaaggttctcggaaaggtctaagtccatcaaaactttggcataatgaccaaacaatctgttc 21016958  T
Q  606 ttggtaacattatcaatcaacaacggtgtcccgatagccccagctatttc 655  Q
    || |||||||||||||| ||||| || || | ||||||||| ||||||||    
T  21016957 ttagtaacattatcaattaacaatggagttctgatagcccctgctatttc 21016908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 419 - 655
Target Start/End: Original strand, 27860447 - 27860682
Alignment:
Q  419 taaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcataacct 518  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||  |||| |||||| ||||||||  | ||||||||||||    
T  27860447 taaccaccgacaagatgttacattatgtccaatacttttacagtgagtgcaaaagtcaggcaacccctcgtattcaatttccactaggaatgcataacct 27860546  T
Q  519 tcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattat 618  Q
    ||   ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||| |||| || |||| || ||| |||||||| ||||||||||    
T  27860547 tcatgttccaccataacttcat-aaaaatgttctcagaaaggtctaaatccaccaaaaccttggcttaatgaccaatcaacatgtttttagtaacattat 27860645  T
Q  619 caatcaacaacggtgtcccgatagccccagctatttc 655  Q
    |||| | |||||| || | |||||||||  |||||||    
T  27860646 caattatcaacggagttctgatagcccccactatttc 27860682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 27860092 - 27860224
Alignment:
Q  50 acgtgatgtaacgacatatgaaatgaagtctgagacttttcaatatgttgtggggctgtatcaatagaaataacagaaatatgactctctacatgtccat 149  Q
    |||| |||| ||||||||||||   |||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |   | |    
T  27860092 acgttatgtgacgacatatgaagcaaagtctgaaacttttcaatatgttgcggggttgtatcaatagaaataacataaatatgactctctacctacgcgt 27860191  T
Q  150 caatatggtctgctggctgctcatgccgagtaa 182  Q
    |||||||||||| ||||||||| ||| ||||||    
T  27860192 caatatggtctgttggctgctcgtgctgagtaa 27860224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 27860229 - 27860340
Alignment:
Q  216 caacctcaattccatggtctgcgtgcacctcctgctggtg---gggaggagaagcagcttgtatcgaagcatcaaaagctttagaggagcctatgtcgga 312  Q
    |||||||| |||||||||||||||||||||||||||| ||   ||||| || |||||||||||| ||||| ||||| ||| ||||||||||||||  |||    
T  27860229 caacctcagttccatggtctgcgtgcacctcctgctgatgatggggagaaggagcagcttgtattgaagcctcaaaggctgtagaggagcctatgctgga 27860328  T
Q  313 ggggttatcctt 324  Q
    ||| ||||||||    
T  27860329 gggattatcctt 27860340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 252
Target Start/End: Original strand, 19974836 - 19975016
Alignment:
Q  63 acatatgaaatgaagtctgagacttttcaatatgttgtggggctgtatcaatagaaataacagaaatatgactctctacatgtccatcaatatggtctgc 162  Q
    |||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||| |||||          ||  ||  ||||||||||||||      
T  19974836 acatatgaaatgtagtctgagatatttcaatatgttgtggggttgtatcaatagaaataaaagaaa---------atatttgcgcatcaatatggtctat 19974926  T
Q  163 tggctgctcatgccgagtaacgagtacctcaacgctctctgcctgtctgtctccaacctcaattccatggtctgcgtgcacctcctgctg 252  Q
    |||||||| |||| |||||||  ||| || |||||| |||   ||||||| | | | ||||| |||||||||||||||||||||||||||    
T  19974927 tggctgctaatgctgagtaaccggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgctg 19975016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 252
Target Start/End: Complemental strand, 21017997 - 21017817
Alignment:
Q  63 acatatgaaatgaagtctgagacttttcaatatgttgtggggctgtatcaatagaaataacagaaatatgactctctacatgtccatcaatatggtctgc 162  Q
    |||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||| |||||          ||  ||  ||||||||||||||      
T  21017997 acatatgaaatgtagtctgagatatttcaatatgttgtggggttgtatcaatagaaataaaagaaa---------atatttgcgcatcaatatggtctat 21017907  T
Q  163 tggctgctcatgccgagtaacgagtacctcaacgctctctgcctgtctgtctccaacctcaattccatggtctgcgtgcacctcctgctg 252  Q
    |||||||| |||| |||||||  ||| || |||||| |||   ||||||| | | | ||||| |||||||||||||||||||||||||||    
T  21017906 tggctgctaatgctgagtaaccggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgctg 21017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 414 - 655
Target Start/End: Complemental strand, 5074213 - 5073972
Alignment:
Q  414 ggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcat 513  Q
    ||||||||||||| |||| ||  ||||||||| ||||||  |||||||||||||||||| |||||||  || | |||||| |||||||||| ||||||||    
T  5074213 ggatgtaaccaccagcaaaataatacattatgtccaatatgtttacagtgagtgcaaaagtcaggcaacccatcgtattcaatttccaccgaaaatgcat 5074114  T
Q  514 aaccttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaac 613  Q
    ||||||||  ||||||||||| ||||||||||||||||  | ||| |||||| || | ||| ||| ||||||| |||| |||||| ||||| || ||||     
T  5074113 aaccttcctgttccaccataacttcataaaaaatgtttctacaaacgtctaagtctaacaaaaccttggcataatgaccaaacaacatgttcttagtaag 5074014  T
Q  614 attatcaatcaacaacggtgtcccgatagccccagctatttc 655  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  5074013 attatcaattaacaacggagtcccgatagcccccgctatttc 5073972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 415 - 644
Target Start/End: Complemental strand, 10177298 - 10177070
Alignment:
Q  415 gatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcata 514  Q
    ||||||||||  |||||||||||| ||||||| |||| |||||||| ||||||||||||||  |||| ||||  ||||| || || || || |||||| |    
T  10177298 gatgtaaccataggcaagatgttaaattatggtcaatgcttttacaatgagtgcaaaattccagcag-ccctcatattcaatctcaacggggaatgcaaa 10177200  T
Q  515 accttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaaca 614  Q
    ||||| | |||||||||||| |||||||||||    |    ||||||||||||||||||| | |||||||||||| | ||| | | |||| || ||||||    
T  10177199 acctttctattccaccataacttcataaaaaaaaactctgaaaaggtctaaatccaccaacaacctggcatagtgtccaaatagtgtgttcttagtaaca 10177100  T
Q  615 ttatcaatcaacaacggtgtcccgatagcc 644  Q
    |||| | | ||||||| ||||  |||||||    
T  10177099 ttattatttaacaacgatgtcttgatagcc 10177070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 10177674 - 10177632
Alignment:
Q  59 aacgacatatgaaatgaagtctgagacttttcaatatgttgtg 101  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||    
T  10177674 aacgacatatgaaaggaagtcttagacttttccatatgttgtg 10177632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 414 - 642
Target Start/End: Complemental strand, 4767 - 4539
Alignment:
Q  414 ggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcat 513  Q
    ||||||||||| ||  |||||| |||||||||  ||||||||||||||||||||||||| |||||||| ||||  ||||   || ||| |||||||||||    
T  4767 ggatgtaaccatcgaaaagatgatacattatgtgcaatacttttacagtgagtgcaaaactcaggcagcccctcctatttcgttgccatcggaaatgcat 4668  T
Q  514 aaccttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaac 613  Q
    ||||||||| || |||||||| |||||||||||||||  | ||||||||||| |||||||| || ||  |||| |||| ||||||| |||| || |||||    
T  4667 aaccttcccgttgcaccataacttcataaaaaatgttcccggaaaggtctaagtccaccaaaactctaacataatgaccaaacaatttgttcttagtaac 4568  T
Q  614 attatcaatcaacaacggtgtcccgatag 642  Q
    ||||||||| |  ||||| ||||||||||    
T  4567 attatcaattagaaacggagtcccgatag 4539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 56 - 252
Target Start/End: Complemental strand, 5112 - 4916
Alignment:
Q  56 tgtaacgacatatgaaatgaagtctgagacttttcaatatgttgtggggctgtatcaatagaaataacagaaatatgactctctacatgtccatcaatat 155  Q
    |||||| |||||||||| ||||| |||||||||||||||||||  |||| ||||||||||||||||||| | | || ||| ||||| ||| |||||||||    
T  5112 tgtaacaacatatgaaacgaagtttgagacttttcaatatgttacggggatgtatcaatagaaataacacataaattactttctacttgtgcatcaatat 5013  T
Q  156 ggtctgctggctgctcatgccgagtaacgagtacctcaacgctctctgcctgtctgtctccaacctcaattccatggtctgcgtgcacctcctgctg 252  Q
     || || ||||||||||||  |||||||  || ||||| |  |||||| |||||||||| | | |||| |||||||||||| |||||||||||||||    
T  5012 agtgtgttggctgctcatgttgagtaacaggtgcctcagcaatctctgtctgtctgtctgcgaactcagttccatggtctgtgtgcacctcctgctg 4916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 4902 - 4862
Alignment:
Q  284 tcaaaagctttagaggagcctatgtcggaggggttatcctt 324  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  4902 tcaaaagctttagaggagcctatgtcggagggattatcctt 4862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 417 - 574
Target Start/End: Complemental strand, 38232766 - 38232609
Alignment:
Q  417 tgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcataac 516  Q
    |||||||||||||| ||| |||||||||||||||||||||| || || |||||||| ||||| |  |||||| |||| || |||||||||||||||||||    
T  38232766 tgtaaccaccggcaggatattacattatggccaatacttttgcaatgcgtgcaaaagtcaggtaaccccttgcattcaatctccaccggaaatgcataac 38232667  T
Q  517 cttcccattccaccataatttcataaaaaatgttttcagaaaggtctaaatccaccaa 574  Q
    |||||| ||||||||||||||||||||| || ||   ||||||||| || ||||||||    
T  38232666 cttccctttccaccataatttcataaaagatattgcgagaaaggtccaagtccaccaa 38232609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 414 - 519
Target Start/End: Original strand, 25188113 - 25188218
Alignment:
Q  414 ggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcat 513  Q
    |||||||||||||  |||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| |||||  | ||||||||||    
T  25188113 ggatgtaaccaccaacaagattttacactatggccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcat 25188212  T
Q  514 aacctt 519  Q
    ||||||    
T  25188213 aacctt 25188218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 418 - 519
Target Start/End: Original strand, 25232073 - 25232174
Alignment:
Q  418 gtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcataacc 517  Q
    |||||||||  |||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| |||||  | ||||||||||||||    
T  25232073 gtaaccaccaacaagattttacattatggccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacc 25232172  T
Q  518 tt 519  Q
    ||    
T  25232173 tt 25232174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 418 - 519
Target Start/End: Original strand, 25296231 - 25296332
Alignment:
Q  418 gtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcataacc 517  Q
    |||||||||  |||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| |||||  | ||||||||||||||    
T  25296231 gtaaccaccaacaagattttacattatggccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacc 25296330  T
Q  518 tt 519  Q
    ||    
T  25296331 tt 25296332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 655
Target Start/End: Original strand, 25239945 - 25240046
Alignment:
Q  554 agaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagccccagctatt 653  Q
    |||||||||||| ||||| ||||||  ||||||||||| ||||||  |||| |||||||||||||| || ||||||||||||||||||||||  ||||||    
T  25239945 agaaaggtctaagtccacaaagaccaaggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatt 25240044  T
Q  654 tc 655  Q
    ||    
T  25240045 tc 25240046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 655
Target Start/End: Original strand, 25304098 - 25304199
Alignment:
Q  554 agaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagccccagctatt 653  Q
    |||||||||||| ||||| ||||||  ||||||||||| ||||||  |||| |||||||||||||| || ||||||||||||||||||||||  ||||||    
T  25304098 agaaaggtctaagtccacaaagaccaaggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatt 25304197  T
Q  654 tc 655  Q
    ||    
T  25304198 tc 25304199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 567 - 655
Target Start/End: Original strand, 25236389 - 25236477
Alignment:
Q  567 tccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagccccagctatttc 655  Q
    ||||| ||||||||||||||||||| ||||||  |||| |||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  25236389 tccacaaagaccctggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttc 25236477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 567 - 655
Target Start/End: Original strand, 25300549 - 25300637
Alignment:
Q  567 tccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagccccagctatttc 655  Q
    ||||| ||||||||||||||||||| ||||||  |||| |||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  25300549 tccacaaagaccctggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttc 25300637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 555 - 643
Target Start/End: Original strand, 25188228 - 25188316
Alignment:
Q  555 gaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagc 643  Q
    ||||||||||| ||||| || ||| |||||||||||| ||||||  |||| || ||||||||||| |  ||||||||||||||||||||    
T  25188228 gaaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaacattatcgactaacaacggtgtcccgatagc 25188316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 38233101 - 38233008
Alignment:
Q  106 tgtatcaatagaaataacagaaatatgactctctacatgtccatcaatatggtctgctggctgctcatgccgagtaacgagtacctcaacgctc 199  Q
    |||||||| | |||||||||||||| |||| ||||| ||  ||||||||||||||| |||||||||||   |||||||  ||||||||| ||||    
T  38233101 tgtatcaagataaataacagaaatacgactttctacctgcgcatcaatatggtctgttggctgctcattatgagtaacatgtacctcaatgctc 38233008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 547
Target Start/End: Original strand, 26789097 - 26789206
Alignment:
Q  438 acattatggccaatacttttacagtgagtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcataaccttcccattccaccataattt 537  Q
    ||||||||||||||  |||||||| ||  ||| || |||| ||||||||  || || ||  |||||||||||||| ||||||| ||||| ||||| |  |    
T  26789097 acattatggccaatggttttacagcgatggcagaaatcagacagtccctcatactctatcgccaccggaaatgcaaaaccttcacattctaccatgacct 26789196  T
Q  538 cataaaaaat 547  Q
    ||||||||||    
T  26789197 cataaaaaat 26789206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 478
Target Start/End: Complemental strand, 21364206 - 21364142
Alignment:
Q  414 ggatgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcagg 478  Q
    ||||||||||| ||||||||  | ||||| ||||||||||| || ||||| |||||||| |||||    
T  21364206 ggatgtaaccaacggcaagaactaacattgtggccaatactcttgcagtgtgtgcaaaaatcagg 21364142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 643
Target Start/End: Original strand, 25232184 - 25232271
Alignment:
Q  555 gaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagc 643  Q
    ||||||||||| ||||| || ||| |||||||||||| ||||||  |||| || |||||| |||| |  || |||||||||||||||||    
T  25232184 gaaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaaca-tatcgactaaaaacggtgtcccgatagc 25232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 643
Target Start/End: Original strand, 25296342 - 25296429
Alignment:
Q  555 gaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaatcaacaacggtgtcccgatagc 643  Q
    ||||||||||| ||||| || ||| |||||||||||| ||||||  |||| || |||||| |||| |  || |||||||||||||||||    
T  25296342 gaaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaaca-tatcgactaaaaacggtgtcccgatagc 25296429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 622
Target Start/End: Complemental strand, 21805682 - 21805614
Alignment:
Q  554 agaaaggtctaaatccaccaagaccctggcatagtgactaaacaatatgtttttggtaacattatcaat 622  Q
    ||||||||||||||||||||| || ||||||||||| || ||||||   ||||| ||||||||||||||    
T  21805682 agaaaggtctaaatccaccaacactctggcatagtgtctgaacaatcgatttttagtaacattatcaat 21805614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 645
Target Start/End: Complemental strand, 34516602 - 34516419
Alignment:
Q  464 agtgcaaaattcaggcagtcccttgtattcgatttccaccggaaatgcataaccttcccattccaccataatttcataaaaaatgttttcagaaaggtct 563  Q
    ||||||||| |  ||||| ||||  ||||| || |||||||| |||||  |||||||   ||||||||| | |||||||||||||| ||  ||||| |||    
T  34516602 agtgcaaaaatacggcagcccctcatattcaatctccaccgggaatgcgaaaccttcgtgttccaccatcacttcataaaaaatgtctttggaaagatct 34516503  T
Q  564 aaatccaccaagaccctggcatagtgactaaacaa--tatgtttttggtaacattatcaatcaacaacggtgtcccgatagccc 645  Q
    ||||||| ||| ||| || ||||||| | ||||||  | ||||||  |||||||| | ||| || ||||||||||||| |||||    
T  34516502 aaatccatcaataccttgacatagtgtccaaacaacctgtgttttcagtaacattcttaattaataacggtgtcccgacagccc 34516419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 98560 - 98491
Alignment:
Q  417 tgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtccct 486  Q
    |||||||| || || |||| |||||| || |||||||| |||||||||||||||||||| ||||| ||||    
T  98560 tgtaaccaacgacatgatgatacattgtgaccaatactcttacagtgagtgcaaaattccggcagaccct 98491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 486
Target Start/End: Original strand, 16690 - 16759
Alignment:
Q  417 tgtaaccaccggcaagatgttacattatggccaatacttttacagtgagtgcaaaattcaggcagtccct 486  Q
    |||||||| || || |||| |||||| || |||||||| |||| ||||||||||||||| ||||| ||||    
T  16690 tgtaaccaacgacatgatgatacattgtgaccaatactcttacggtgagtgcaaaattccggcagaccct 16759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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