View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592-INSERTION-7 (Length: 416)
Name: NF1592-INSERTION-7
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592-INSERTION-7 |
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| [»] chr8 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 206 - 416
Target Start/End: Original strand, 922162 - 922373
Alignment:
| Q |
206 |
cagtcgaaaatgtggagggttaaagatgatcagggtcgtattattactattcattctgatcatgctcctggtatgctttggtttgattcagaatttctgt |
305 |
Q |
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| T |
922162 |
cagtcgaaaatgtggagggttaaagatgatcagggtcgtattattactattcattctgatcatgctcctggtatgctttggtttgattcagaatttctgt |
922261 |
T |
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| Q |
306 |
ttgttaaattcatattacggtcataatttataaagtttccttttcaatttcaagtttagggtctgtttggattagacttatttgagtatatata-tgacc |
404 |
Q |
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| T |
922262 |
ttgttaaattcatattacggtcataatttataaagtttccttttcaatttcaagtttagggtctgtttggattagacttatttgagtttatatactgacc |
922361 |
T |
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| Q |
405 |
taagttttgtga |
416 |
Q |
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|||||||||||| |
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| T |
922362 |
taagttttgtga |
922373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 921962 - 922096
Alignment:
| Q |
6 |
caaaaacgatccaaagggttaagttgctaagcaaccaaaatgggaatctccatgctttgagaagtggacataacgtatagaatacgccagagggcgttta |
105 |
Q |
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| T |
921962 |
caaaaacgatccaaagggttaagttgctaagcaaccaaaatgggaatctccatgctttgagaagtagacataacgtatagaatacgccagagggtgttta |
922061 |
T |
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| Q |
106 |
taagaaagactagtcacaatggtaagttagactcc |
140 |
Q |
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| T |
922062 |
taagaaagactagtcacaatggtaagttagactcc |
922096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 229 - 380
Target Start/End: Original strand, 14365020 - 14365169
Alignment:
| Q |
229 |
agatgatcagggtcgtattattactattcattctgatcatgctcctggtatgctttggtttgattcagaatttctgtttgttaaattcatattacggtca |
328 |
Q |
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| T |
14365020 |
agatgatcgggaccgtgttattactgttcattctgattcggttcctggtaagctttggtttgattcaggatttcttgttgttaaattcatattactgtca |
14365119 |
T |
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| Q |
329 |
taatttataaagtttccttttcaatttcaagtttagggtctgtttggattag |
380 |
Q |
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| T |
14365120 |
taatttat--agtttccttttcaatttcaagtttagggtctgtgtggattag |
14365169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 15584005 - 15584090
Alignment:
| Q |
6 |
caaaaacgatccaaagggttaagttgctaagcaaccaaaatgggaatctccatgctttgagaagtggacataacgtatagaatacg |
91 |
Q |
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| T |
15584005 |
caaaaacgatccaaaggattaagctgctaagcaaccaaaatgggaatctccatgctttgagaagtggacataacgtgtagaatacg |
15584090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 28792104 - 28792148
Alignment:
| Q |
348 |
ttcaatttcaagtttagggtctgtttggattagacttatttgagt |
392 |
Q |
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| T |
28792104 |
ttcaatttcaagtttagtgtctgtttggataggacttatttgagt |
28792148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 21405065 - 21405120
Alignment:
| Q |
361 |
ttagggtctgtttggattagacttatttgagtatatata-tgacctaagttttgtga |
416 |
Q |
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| T |
21405065 |
ttagggtctgtttggatt-gacttatttgagcttatatactgacataagttttgtga |
21405120 |
T |
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