View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592-INSERTION-8 (Length: 395)
Name: NF1592-INSERTION-8
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592-INSERTION-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 30437011 - 30436623
Alignment:
| Q |
7 |
aaatccctcatagttatttatacctacatgatcacaagttatgtagctccgagacatcatattgaaggcatgtccaggcgttcaaccaacacttgcatat |
106 |
Q |
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| T |
30437011 |
aaatccctcatagttatttatacctacatgatcacaagttatgtagctccgagacatcatattgaaggcatgtccaggcgttcaaccaacacttgcatat |
30436912 |
T |
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| Q |
107 |
gtggctacatccaattacttctattttcttaaatcattacttgtgtttacgtgttagagctttgtatatcatgagtgcccaaacaacaacatccctaaca |
206 |
Q |
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| T |
30436911 |
gtggctacatccaattacttctattttcttaaatcgttacttgtgtttacgtgttagagctttgtatatcatgagtgcccaaacaacaacatccctaaca |
30436812 |
T |
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| Q |
207 |
actatacttaatagacctttgctgttaccacttcgtcccttgttataagtatcagttttctatttcacagtacacatattaagaaaattaggcagtgtac |
306 |
Q |
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| T |
30436811 |
actatacttaatagacctttgctgttactacttcgtcccttgttataagtatcatttttctatttcacagtacacatattaagaaaattaggcagtgtac |
30436712 |
T |
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| Q |
307 |
taaatttttcgttgtgtataaattttataaaattgtctttaattaatcttttagttaaacaatgataatagtagtatatggattaggaa |
395 |
Q |
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| T |
30436711 |
taaatttttcgttgtgtataaattttataaaattgtctttaattaatcttttagttaaacaatgatactagtagtatatggattaggaa |
30436623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 30271731 - 30271683
Alignment:
| Q |
112 |
tacatccaattacttctattttcttaaatcattacttgtgtttacgtgt |
160 |
Q |
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| T |
30271731 |
tacattcaatcacttctatattcttaaatcattactggtgtttacgtgt |
30271683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 29360448 - 29360496
Alignment:
| Q |
112 |
tacatccaattacttctattttcttaaatcattacttgtgtttacgtgt |
160 |
Q |
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| T |
29360448 |
tacattcaatcacttttatattcttaaatcattactggtgtttacgtgt |
29360496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 26073267 - 26073227
Alignment:
| Q |
112 |
tacatccaattacttctattttcttaaatcattacttgtgt |
152 |
Q |
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| T |
26073267 |
tacattcaattacttctactttcttaaattattacttgtgt |
26073227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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