View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1592-INSERTION-9 (Length: 590)
Name: NF1592-INSERTION-9
Description: NF1592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1592-INSERTION-9 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 405 - 541
Target Start/End: Complemental strand, 52671241 - 52671106
Alignment:
| Q |
405 |
catattattaccattattatgctttacataatgttgtcaactagtataatcttctctacttttttaattttgttttacatatgatatctcttcttccaag |
504 |
Q |
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| T |
52671241 |
catattattaccattattatgctttacataatgttgccaacta---taatcttctctacttttttaattttgttttacatatgatatctcttcttccaag |
52671145 |
T |
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| Q |
505 |
taaaactgaagcaaaactat--aaagaagattgaagtac |
541 |
Q |
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| T |
52671144 |
taaaactgatgcaaaactcttaaaagaagattgaagtac |
52671106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 14360724 - 14360902
Alignment:
| Q |
114 |
gaatatgatatactcttggctttggtttctttgggagttgggattgtgaatgaaaactctttatgttcttacttcaaagccctgtgattattaatattaa |
213 |
Q |
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| T |
14360724 |
gaatatggtataattttggctttggtttatttgggagttgagattgtgaatagagactttttatgttcttacttcaaaactctctgattattagtattaa |
14360823 |
T |
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| Q |
214 |
gc----tttcaaacccattgaaagagaaaggatttgaagtctgaaagagggtgcttgcaatgagagagacaaagttgat |
288 |
Q |
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| T |
14360824 |
gcttaatttcaaacccattgaaagagaaaagatatgaagtctgaaagagggaccttgcaacaagagagataaagttgat |
14360902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 17591229 - 17591286
Alignment:
| Q |
285 |
tgatgttgctggtggtggatggcatggaggagagagaaaggtgatagtgggtggaaga |
342 |
Q |
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| T |
17591229 |
tgatgttgctggtggtgggtggcatggatgagagagaagggtgatagtgggtggaaga |
17591286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 36912920 - 36912957
Alignment:
| Q |
337 |
ggaagaaaaaattcaaatgtgaagagactatcataaga |
374 |
Q |
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| T |
36912920 |
ggaagaaaaaaatcaagtgtgaagagactatcataaga |
36912957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 19130239 - 19130296
Alignment:
| Q |
285 |
tgatgttgctggtggtggatggcatggaggagagagaaaggtgatagtgggtggaaga |
342 |
Q |
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| T |
19130239 |
tgatgttgcaggtggtgggtggcatggaggagagagaagggtgatagtgggtggaaga |
19130296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 14735560 - 14735503
Alignment:
| Q |
285 |
tgatgttgctggtggtggatggcatggaggagagagaaaggtgatagtgggtggaaga |
342 |
Q |
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||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||| |
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| T |
14735560 |
tgatgttgctggtagtgggtggcatggatgagagagaaggatgatagtgggtggaaga |
14735503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 14735477 - 14735440
Alignment:
| Q |
337 |
ggaagaaaaaattcaaatgtgaagagactatcataaga |
374 |
Q |
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||||||||||| |||| ||||||||||||||||||||| |
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| T |
14735477 |
ggaagaaaaaaatcaagtgtgaagagactatcataaga |
14735440 |
T |
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