View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15920_high_2 (Length: 300)

Name: NF15920_high_2
Description: NF15920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15920_high_2
NF15920_high_2
[»] chr3 (1 HSPs)
chr3 (7-300)||(25695549-25695843)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 25695549 - 25695843
Alignment:
Q  7 acatcatcataataataacctcaatctcaacttt-cacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat 105  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25695549 acatcatcatcataataacctcaatctcaacttttcacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat 25695648  T
Q  106 catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25695649 catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct 25695748  T
Q  206 gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccctacttatcttttaccttgtgtcattgctctctcttacttctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  25695749 gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccctacttatctcttaccttgtgtcattgctctctctttcttctc 25695843  T

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