View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15920_low_1 (Length: 346)

Name: NF15920_low_1
Description: NF15920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15920_low_1
NF15920_low_1
[»] chr2 (2 HSPs)
chr2 (18-213)||(29350645-29350841)
chr2 (258-336)||(29350829-29350907)
[»] chr8 (5 HSPs)
chr8 (257-336)||(4030364-4030443)
chr8 (211-261)||(4031577-4031627)
chr8 (211-269)||(12195684-12195742)
chr8 (211-269)||(12440112-12440170)
chr8 (212-272)||(15349244-15349304)
[»] chr3 (3 HSPs)
chr3 (211-336)||(11015067-11015192)
chr3 (212-336)||(11024079-11024203)
chr3 (212-300)||(11005540-11005628)
[»] chr4 (26 HSPs)
chr4 (211-278)||(49038512-49038579)
chr4 (211-272)||(45371714-45371775)
chr4 (211-336)||(49043744-49043869)
chr4 (212-288)||(7790441-7790517)
chr4 (212-336)||(48870921-48871045)
chr4 (212-336)||(48876225-48876349)
chr4 (211-272)||(7878743-7878804)
chr4 (211-288)||(48147337-48147414)
chr4 (211-272)||(48853041-48853102)
chr4 (211-272)||(48864395-48864456)
chr4 (212-272)||(7908663-7908723)
chr4 (212-336)||(48886607-48886731)
chr4 (212-272)||(7786825-7786885)
chr4 (211-269)||(48156072-48156130)
chr4 (212-270)||(50666676-50666734)
chr4 (216-269)||(7237386-7237439)
chr4 (211-272)||(7773465-7773526)
chr4 (221-270)||(37826632-37826681)
chr4 (211-336)||(45365796-45365921)
chr4 (211-272)||(45384532-45384593)
chr4 (212-272)||(7766003-7766063)
chr4 (216-272)||(7771760-7771816)
chr4 (212-272)||(7813838-7813898)
chr4 (212-278)||(48903316-48903382)
chr4 (215-272)||(50669446-50669503)
chr4 (212-272)||(7800998-7801058)
[»] chr5 (4 HSPs)
chr5 (210-272)||(42561973-42562035)
chr5 (211-335)||(9120123-9120247)
chr5 (211-255)||(179418-179462)
chr5 (211-303)||(29688489-29688581)
[»] chr6 (2 HSPs)
chr6 (211-288)||(21016181-21016258)
chr6 (218-258)||(14197337-14197377)
[»] chr7 (1 HSPs)
chr7 (211-272)||(48884184-48884245)
[»] chr1 (5 HSPs)
chr1 (211-272)||(24416138-24416199)
chr1 (217-272)||(24367531-24367586)
chr1 (211-272)||(24340771-24340832)
chr1 (211-272)||(24353136-24353197)
chr1 (220-272)||(24323139-24323191)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 29350645 - 29350841
Alignment:
Q  18 ccttgaagtagcaccctctgagaaaggaattttcatttgtgaaaggaagtattgcatatattttttatatctgataatgaacacttggaatgcaagccaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29350645 ccttgaagtagcaccctctgagaaaggaattttcatttgtgaaaggaagtattgcatatattttttatatctgataataaacacttggaatgcaagccaa 29350744  T
Q  118 ttggtaaactttcatatccttctacca-gggggacggatgcacaaccaaaagaatgtgggcatgtgccccctctaaattttcaataagactcttgtt 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29350745 ttggtaaactttcatatccttctaccaggggggacggatgcacaaccaaaagaatgtgggcatgtgccccctctaaattttcaataagactcttgtt 29350841  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 29350829 - 29350907
Alignment:
Q  258 taagactcttgttctgtctatagatgacatttccattaagtactttgccccaatgtgctctacaataagtggtgatatt 336  Q
    ||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  29350829 taagactcttgttctgtctattgatggcatttccaataagtattttgccccaatgtgctctacaataggtggtgatatt 29350907  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 4030443 - 4030364
Alignment:
Q  257 ctaagactcttgttctgtctatagatgacatttccattaagtactttgccccaatgtgctctacaataagtggtgatatt 336  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4030443 ctaagactcttgttctgtctattgatggcatttccattaagtacttttccccaatgtgctctacaataagtggtgatatt 4030364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 4031627 - 4031577
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaag 261  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  4031627 gttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 12195684 - 12195742
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 269  Q
    |||||||||||||  |||||||||| ||||   || |||||||||||||||||||||||    
T  12195684 gttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 12440112 - 12440170
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 269  Q
    |||||||||||||  |||||||||| ||||   || |||||||||||||||||||||||    
T  12440112 gttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 15349244 - 15349304
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||||||||||| |||||||||| |||| || | || |||||||| |||| |||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 15349304  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 11015192 - 11015067
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 310  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||  ||| |||||||| || ||||| ||||||||||||||| |||| | | ||||||    
T  11015192 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatgacatttccattgagtattatcccccaa 11015093  T
Q  311 tgtgctctacaataagtggtgatatt 336  Q
    | |||||||||| |||||||| ||||    
T  11015092 tatgctctacaaaaagtggtggtatt 11015067  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 212 - 336
Target Start/End: Complemental strand, 11024203 - 11024079
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 311  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| || ||||| ||| |||||| |||| ||||   | |||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatttacattcagtatgatcccccaat 11024104  T
Q  312 gtgctctacaataagtggtgatatt 336  Q
     |||||||||| | ||||| |||||    
T  11024103 atgctctacaaaatgtggtcatatt 11024079  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 11005628 - 11005540
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtac 300  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||  | ||||| |||| ||||| |||| |||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgtcttatctattgatggcatttgcattcagtac 11005540  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 49038579 - 49038512
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctat 278  Q
    |||||||||||||| |||||||||| |||| | ||||| |||||||||||||||||||||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctat 49038512  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 45371775 - 45371714
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||    
T  45371775 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttct 45371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 49043869 - 49043744
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 310  Q
    |||||||||||||| |||||||||| |||| ||||||| || |||||||||||||||||| | ||||| |||| |||| ||| | | ||||| || ||||    
T  49043869 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattacttcgctccaa 49043770  T
Q  311 tgtgctctacaataagtggtgatatt 336  Q
    | || | ||||| || ||||||||||    
T  49043769 tatgttgtacaaaaattggtgatatt 49043744  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 7790441 - 7790517
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatt 288  Q
    ||||||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||| ||||| |||| ||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccatt 7790517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 48870921 - 48871045
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 311  Q
    ||||||| ||||| ||||| |||| |||| || | || |||||||| |||||||||||||| ||| | ||||||||||||  | ||| |||| ||||| |    
T  48870921 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccatt 48871020  T
Q  312 gtgctctacaataagtggtgatatt 336  Q
    ||||| ||||| |||||||||||||    
T  48871021 gtgctgtacaaaaagtggtgatatt 48871045  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 48876225 - 48876349
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 311  Q
    ||||||| ||||| ||||| |||| |||| || | || |||||||| |||||||||||||| ||| | ||||||||||||  | ||| |||| ||||| |    
T  48876225 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccatt 48876324  T
Q  312 gtgctctacaataagtggtgatatt 336  Q
    ||||| ||||| |||||||||||||    
T  48876325 gtgctgtacaaaaagtggtgatatt 48876349  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 7878743 - 7878804
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||| ||| |||||||||||    
T  7878743 gttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttct 7878804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 48147414 - 48147337
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatt 288  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||  | ||||||| |||| ||||    
T  48147414 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcatt 48147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 48853041 - 48853102
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||| |||||||||| |||| ||| ||| |||||||||||||||||||||||    
T  48853041 gttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 48853102  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 48864395 - 48864456
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||||||||| |||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttct 48864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 7908663 - 7908723
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||| ||| |||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttct 7908723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 48886607 - 48886731
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 311  Q
    ||||||| ||||| ||||| |||| |||| || | || |||||||| |||||||||||||| ||| | |||||||||||   | ||| |||| ||||| |    
T  48886607 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttccccatt 48886706  T
Q  312 gtgctctacaataagtggtgatatt 336  Q
    ||||| ||||| |||||||||||||    
T  48886707 gtgctgtacaaaaagtggtgatatt 48886731  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 7786825 - 7786885
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||||||||||| |||||||||| |||  |||||| |||||||| |||||||||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttct 7786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 48156130 - 48156072
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 269  Q
    |||||||||||||| ||||| |||| |||| ||||||| ||||||||||| ||||||||    
T  48156130 gttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 50666676 - 50666734
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgtt 270  Q
    ||||| ||||||| ||| |||||| |||| ||||||||||||||||||| |||||||||    
T  50666676 ttgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 7237439 - 7237386
Alignment:
Q  216 aatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 269  Q
    ||||||||| |||||||||| |||||||||||| | ||||||||| ||||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 7773526 - 7773465
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||| |||  ||||||||||    
T  7773526 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttct 7773465  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  221 gggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgtt 270  Q
    |||| |||||||||| |||| ||||||| |||||||||||||||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 45365921 - 45365796
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 310  Q
    |||||||||||||| ||||||||||  ||| ||| ||| |||||||| |||||||  |||||  |||| |||| |||| ||| | | |||||| ||||      
T  45365921 gttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctt 45365822  T
Q  311 tgtgctctacaataagtggtgatatt 336  Q
    | |||||||||| ||| |||||||||    
T  45365821 tatgctctacaaaaagcggtgatatt 45365796  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 45384593 - 45384532
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||| ||||||||||  ||| ||||||| |||||||| ||||||| ||||||    
T  45384593 gttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttct 45384532  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 7766003 - 7766063
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||||||||||| |||||||||| |||| || |||| || ||||||||||| ||||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 7766063  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 7771760 - 7771816
Alignment:
Q  216 aatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||||||| |||||||||| |||| ||||||| || |||||||| |||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttct 7771816  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 7813838 - 7813898
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||  ||||||||| |||| ||||||| ||||||| ||| |||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttct 7813898  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 48903316 - 48903382
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctat 278  Q
    ||||||||||||| |||||||||| |||| ||||||  ||||||||||| | |  ||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaatttgtgttctgtctat 48903382  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 50669446 - 50669503
Alignment:
Q  215 aaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||| ||||| |||||||| | |||  |||||||||||||||||||||||||| ||||    
T  50669446 aaatgtgggtgatgaaagattccaagttgcattcatcttggactaagactcttattct 50669503  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 7800998 - 7801058
Alignment:
Q  212 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||||||  ||||||| | |||| ||||||| ||||||| ||| |||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 7801058  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 42562035 - 42561973
Alignment:
Q  210 tgttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||| |||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||    
T  42562035 tgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttct 42561973  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 9120123 - 9120247
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 310  Q
    |||||||||||||| |||||||||| |||| ||||||| |||||||  || ||||||||| ||||||| || | |||||||| ||||   ||| |||| |    
T  9120123 gttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgttttgtctattgacggcatttccactaagctattttccccta 9120222  T
Q  311 tgtgctctacaataagtggtgatat 335  Q
    | || || |||| ||||||||||||    
T  9120223 tatgttcaacaaaaagtggtgatat 9120247  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 179418 - 179462
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttgg 255  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||    
T  179418 gttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 29688489 - 29688581
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtacttt 303  Q
    |||||||||||||| |||||| ||| |||  |||| || |||||||| |||||||| ||||| ||| | | ||||||| ||||| | ||||||    
T  29688489 gttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttt 29688581  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 21016181 - 21016258
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatt 288  Q
    ||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||  | | ||||| |||||||||    
T  21016181 gttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 21016258  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  218 tatgggttatgaaagaatgcaaaatgcattcatcttggact 258  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 48884184 - 48884245
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||||| ||| |||||||||| |||| |||||   |||||||||||||||||||||||    
T  48884184 gttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttct 48884245  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 24416138 - 24416199
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||| |||||||| |||||||||| ||||  ||| |||||||||||||| |||||||||||    
T  24416138 gttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  217 atatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    |||||||| ||| |||||| |||| ||||||| ||||||||||| |||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 24340771 - 24340832
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||| || ||||| ||||||||||  ||| |||| |||||||||||||| |||||||||||    
T  24340771 gttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 24353136 - 24353197
Alignment:
Q  211 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||| || ||||| ||||||||||  ||| |||| |||||||||||||| |||||||||||    
T  24353136 gttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24353197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 24323139 - 24323191
Alignment:
Q  220 tgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 272  Q
    ||||| |||||||||| |||| |||| ||||||| |||||| |||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttct 24323191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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