View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15920_low_2 (Length: 300)

Name: NF15920_low_2
Description: NF15920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15920_low_2
NF15920_low_2
[»] chr3 (1 HSPs)
chr3 (7-300)||(25695549-25695843)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 25695549 - 25695843
Alignment:
Q  7 acatcatcataataataacctcaatctcaacttt-cacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat 105  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25695549 acatcatcatcataataacctcaatctcaacttttcacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat 25695648  T
Q  106 catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25695649 catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct 25695748  T
Q  206 gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccctacttatcttttaccttgtgtcattgctctctcttacttctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  25695749 gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccctacttatctcttaccttgtgtcattgctctctctttcttctc 25695843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University