View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15920_low_4 (Length: 240)
Name: NF15920_low_4
Description: NF15920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15920_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 53941511 - 53941323
Alignment:
| Q |
15 |
ccacatattgttaatcaagccagcaacatcgttaattttatagtaatgttggaggagggggtttcaagaactggaaaaatgaaaggctcgcaattatgat |
114 |
Q |
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| T |
53941511 |
ccacatattgttaatcaagccagcaacatcattaattttatagtaatgttggaggagggggtttcaagaactggaaaaaagaaaggctcgcaattatgat |
53941412 |
T |
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| Q |
115 |
atattacatgtgtttcgaatgtgctcctcctaatgtctcggtttagattctccatgttgtcaatatcaataagttagtttgacttcttc |
203 |
Q |
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| T |
53941411 |
atattacatgtgtttggaatgtgctcctcctaatgtctcggcttagattctccatgttgttaatatcagtgagttagtttgacttcttc |
53941323 |
T |
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