View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15921_high_2 (Length: 243)
Name: NF15921_high_2
Description: NF15921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15921_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 20447949 - 20447734
Alignment:
| Q |
19 |
tgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagtg |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20447949 |
tgttgagtaagtgcggtctaattgctggttattggagtagttttagtctagtttgttggtctttattttactgagtcaataatcctaattattaggagtg |
20447850 |
T |
|
| Q |
119 |
acagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
20447849 |
acagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaggattgtaaaacgtgggttgcagtttatttctttccttgt |
20447750 |
T |
|
| Q |
219 |
agctatttggcctttg |
234 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
20447749 |
agctatttagcctttg |
20447734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 20452296 - 20452081
Alignment:
| Q |
19 |
tgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagtg |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20452296 |
tgttaagtaagtggggtctaattgctggttattggagtagttttagtctaatttgttggtctttattttactgagtcaataatcctaattattaggagtg |
20452197 |
T |
|
| Q |
119 |
acagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttgt |
218 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
20452196 |
atagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaggattgtaaaacgtgggttgcagtttatttctttccttgt |
20452097 |
T |
|
| Q |
219 |
agctatttggcctttg |
234 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
20452096 |
agctatttagcctttg |
20452081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 20440070 - 20440020
Alignment:
| Q |
19 |
tgttgagtaagtggggtctaattgctggttattggagtagttttagtctag |
69 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
20440070 |
tgttgagtaagtgcggtctaattgctggttattggagtagttttagtctag |
20440020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 1374389 - 1374604
Alignment:
| Q |
19 |
tgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagtg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
1374389 |
tgttgagtaagtggggtctaattgctggttattggagtagttttagtttagtttgttggtctttattttactgagttaataatcctaattattaggagtg |
1374488 |
T |
|
| Q |
119 |
acagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1374489 |
acagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaggattgtaaaacgtgggttgcagtttatttctttccttgt |
1374588 |
T |
|
| Q |
219 |
agctatttggcctttg |
234 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
1374589 |
agctatttagcctttg |
1374604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 1367347 - 1367563
Alignment:
| Q |
18 |
ctgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagt |
117 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1367347 |
ctgttgagtaagtgggatttaattgctggttattggagtagttttagtttagtttgttggtctttattttactgagtcaataatcctaattattaggagt |
1367446 |
T |
|
| Q |
118 |
gacagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttg |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1367447 |
gatagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaggattgtaaaacgtgggttgcagtttatttctttccttg |
1367546 |
T |
|
| Q |
218 |
tagctatttggcctttg |
234 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
1367547 |
tagctatttagcctttg |
1367563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 255803 - 255588
Alignment:
| Q |
18 |
ctgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
255803 |
ctgtttagtaagtggggtctaattgctggttattggagtagttttagtctagtttgttggtctttattttactgagtcaataatcctaattattagaagt |
255704 |
T |
|
| Q |
118 |
gacagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||| |
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|
| T |
255703 |
gacagatgttgatttgcatcagttatagctgttgctattatttagccacttccacgttctaggattgcaaaacgtgggttgcag-atatttctttccttg |
255605 |
T |
|
| Q |
218 |
tagctatttggcctttg |
234 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
255604 |
tagctatttagcctttg |
255588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 660117 - 660332
Alignment:
| Q |
18 |
ctgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660117 |
ctgtttagtaagtggggtctaattgctggttattggagtagttttagtctagtttgttggtctttattttactgagtcaataatcctaattattagaagt |
660216 |
T |
|
| Q |
118 |
gacagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||| |
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|
| T |
660217 |
gacagatgttgatttgcatcagttatagctgttgctattatttagccacttccacgttctaggattgcaaaacgtgggttgcag-atatttctttccttg |
660315 |
T |
|
| Q |
218 |
tagctatttggcctttg |
234 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
660316 |
tagctatttagcctttg |
660332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 845853 - 846068
Alignment:
| Q |
18 |
ctgttgagtaagtggggtctaattgctggttattggagtagttttagtctagtttgtcggtctttattttactgagtcaataatcctaattattagaagt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
845853 |
ctgtttagtaagtggggtctaattgctggttattggagtagttttagtctagtttgttggtctttattttactgagtcaataatcctaattattagaagt |
845952 |
T |
|
| Q |
118 |
gacagatgttgatttgcatcagttatagttgttgctattatttagccacttccacgttctaagattgtaaaacgtgggttgtagtttatttctttccttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
845953 |
gacagatgttgatttgcatcagttatagctgttgctattatttagccacttccacgttctaggattgcaaaacgtgggttgcag-atatttctttccttg |
846051 |
T |
|
| Q |
218 |
tagctatttggcctttg |
234 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
846052 |
tagctatttagcctttg |
846068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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