View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15922_high_3 (Length: 494)

Name: NF15922_high_3
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15922_high_3
NF15922_high_3
[»] chr1 (4 HSPs)
chr1 (170-388)||(23052271-23052495)
chr1 (16-84)||(23052582-23052650)
chr1 (336-388)||(41516960-41517012)
chr1 (336-388)||(6932245-6932297)
[»] chr4 (1 HSPs)
chr4 (364-479)||(46012580-46012695)
[»] chr6 (1 HSPs)
chr6 (201-257)||(7262973-7263029)
[»] chr2 (2 HSPs)
chr2 (337-398)||(36987162-36987223)
chr2 (336-388)||(33502909-33502961)
[»] scaffold0899 (1 HSPs)
scaffold0899 (213-257)||(544-588)
[»] chr5 (3 HSPs)
chr5 (336-399)||(13224668-13224731)
chr5 (364-398)||(36927734-36927768)
chr5 (221-257)||(3043131-3043167)
[»] chr7 (1 HSPs)
chr7 (221-267)||(45004907-45004953)
[»] chr3 (2 HSPs)
chr3 (221-257)||(3845239-3845275)
chr3 (339-383)||(31708070-31708114)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 170 - 388
Target Start/End: Complemental strand, 23052495 - 23052271
Alignment:
Q  170 gtgaaccaaataatgagaaaagggggaaatgggttccactgtaagatgaggcaaacttgattcaagaggtgtagaattgattttgacaagttcggttatt 269  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  23052495 gtgaaccaaataatgagaaaagggggaaattggttccactctaagatgaggcaaacatgatttaagaggtgtagaattgattttgacaagtttggttatt 23052396  T
Q  270 ttagagtataatattttta------ttttgatgaactatgagtgtgattaagcatcaaggtgaaactatttacgagtataattgattttgcatttataac 363  Q
    |||||||||||||||||||      |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23052395 ttagagtataatatttttatttttatttttatgaactatgagtgtggttaagcatcaaggtgaaactattttcgagtataattgattttgcatttataac 23052296  T
Q  364 tgattctaacttgaagctagaattt 388  Q
    |||||||||||||||||||||||||    
T  23052295 tgattctaacttgaagctagaattt 23052271  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 23052650 - 23052582
Alignment:
Q  16 gcttatgctaaggaaatggaacgcctttctgctaaagaatctcttcttcttgctgtaagccactcattt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23052650 gcttatgctaaggaaatggaacgcctttctgctaaagaatctcttcttcttgctgtaagccactcattt 23052582  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 41516960 - 41517012
Alignment:
Q  336 cgagtataattgattttgcatttataactgattctaacttgaagctagaattt 388  Q
    |||||| |||||||||||| |||| || |||||||||||||||| ||||||||    
T  41516960 cgagtagaattgattttgcgtttaaaattgattctaacttgaagttagaattt 41517012  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 6932297 - 6932245
Alignment:
Q  336 cgagtataattgattttgcatttataactgattctaacttgaagctagaattt 388  Q
    |||||| ||||||||||||||  |||| |||||||||||| || |||||||||    
T  6932297 cgagtaaaattgattttgcatccataattgattctaacttcaaactagaattt 6932245  T

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Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 364 - 479
Target Start/End: Complemental strand, 46012695 - 46012580
Alignment:
Q  364 tgattctaacttgaagctagaatttacagcttttacaaaaccaagttaatttatcaatctgatttggatatcatctttgattttagacagtggcagatgc 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  46012695 tgattctaacttgaagctagaatttacagcttttacaaaaccaagttaatttatcattctgattcggatatcatctttgattttagacagtggcagatgc 46012596  T
Q  464 tgcacaacaaacaacc 479  Q
    ||||||||||||||||    
T  46012595 tgcacaacaaacaacc 46012580  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 7262973 - 7263029
Alignment:
Q  201 ggttccactgtaagatgaggcaaacttgattcaagaggtgtagaattgattttgaca 257  Q
    ||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||    
T  7262973 ggttccacttttagatgaggcaaaattgattctagaagtgtagaattgattttgaca 7263029  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 36987223 - 36987162
Alignment:
Q  337 gagtataattgattttgcatttataactgattctaacttgaagctagaatttacagctttta 398  Q
    |||||||||||||||||| |  | || |||||||||||||||| ||||||||| ||||||||    
T  36987223 gagtataattgattttgcttccagaaatgattctaacttgaagttagaatttatagctttta 36987162  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 33502961 - 33502909
Alignment:
Q  336 cgagtataattgattttgcatttataactgattctaacttgaagctagaattt 388  Q
    |||||| || |||||||||||  | || |||||||||||||||||||||||||    
T  33502961 cgagtaaaactgattttgcatccagaattgattctaacttgaagctagaattt 33502909  T

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Target: scaffold0899 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 544 - 588
Alignment:
Q  213 agatgaggcaaacttgattcaagaggtgtagaattgattttgaca 257  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||    
T  544 agatgaggcaaaattgattcaagaggtgcacaattgattttgaca 588  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 13224731 - 13224668
Alignment:
Q  336 cgagtataattgattttgcatttataactgattctaacttgaagctagaatttacagcttttac 399  Q
    ||||||||||||||||||  | ||||| | |||| ||||||||||||||||||  |||||||||    
T  13224731 cgagtataattgattttgtttctataattcattcaaacttgaagctagaatttggagcttttac 13224668  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Original strand, 36927734 - 36927768
Alignment:
Q  364 tgattctaacttgaagctagaatttacagctttta 398  Q
    |||||||||||||||||||||||||| ||||||||    
T  36927734 tgattctaacttgaagctagaatttagagctttta 36927768  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 3043167 - 3043131
Alignment:
Q  221 caaacttgattcaagaggtgtagaattgattttgaca 257  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  3043167 caaaattgattctagaggtgtagaattgattttgaca 3043131  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 45004907 - 45004953
Alignment:
Q  221 caaacttgattcaagaggtgtagaattgattttgacaagttcggtta 267  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||||    
T  45004907 caaaattgattctagaggtgtagaattgattttgacatgtttggtta 45004953  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 3845275 - 3845239
Alignment:
Q  221 caaacttgattcaagaggtgtagaattgattttgaca 257  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  3845275 caaaattgattctagaggtgtagaattgattttgaca 3845239  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 31708070 - 31708114
Alignment:
Q  339 gtataattgattttgcatttataactgattctaacttgaagctag 383  Q
    |||||||||||||||  |||| || ||||||||||||||||||||    
T  31708070 gtataattgattttgactttagaaatgattctaacttgaagctag 31708114  T

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