View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15922_low_1 (Length: 546)
Name: NF15922_low_1
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 222 - 530
Target Start/End: Complemental strand, 27780698 - 27780390
Alignment:
| Q |
222 |
gcatgggagttcttccgtggatggattcacaagaatctaacaacataggacaaatccacacattgtacataacttcatgtattttcttcactacaaattt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780698 |
gcatgggagttcttccgtggatggattcacaagaatctaacaacatgggacaaatccacacattgtacataacttcatgtattttcttcactacaaattt |
27780599 |
T |
|
| Q |
322 |
taataattaagacaaagcaaaacgacccatgttcataatctaatctcctagaatttcacatataaaaaacaaatcgaacttttcatttcaagtgtagcct |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
27780598 |
taataattaagacaaagcaaaacgacccatgttcataatctaatctcctagaatttcacatataaaaaacaaatccaacttataatttcaagtgtagcct |
27780499 |
T |
|
| Q |
422 |
tgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaacaagaattaaaccaatcaatgtaaccattaata |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27780498 |
tgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaacaagaattaaaccaatcaatgtaactattaata |
27780399 |
T |
|
| Q |
522 |
tcacattgg |
530 |
Q |
| |
|
||||||||| |
|
|
| T |
27780398 |
tcacattgg |
27780390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 27780809 - 27780730
Alignment:
| Q |
123 |
atatattcaattcaagacaaattcaattgtaaccacaaacttatgcaatctgtcataatataattttacttcaaatatat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780809 |
atatattcaattcaagacaaattcaattgtaaccacaaacttatgcaatctgtcataatataattttacttcaaatatat |
27780730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 409 - 499
Target Start/End: Complemental strand, 12641069 - 12640979
Alignment:
| Q |
409 |
tcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaacaagaattaaa |
499 |
Q |
| |
|
||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||| || |||| ||||||||| | ||||||| |
|
|
| T |
12641069 |
tcaagtgtagccttgtttgtacttacgaaagagatcctcagttttggcattcctaaaagcaaagcatccaatcaaataaaccacaattaaa |
12640979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University