View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_11 (Length: 347)
Name: NF15922_low_11
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 31742086 - 31741762
Alignment:
| Q |
1 |
agaaatatactgataaaggattactataattgagtatgaatcttaaccagaaaaaagacagtgcagagtacaaacctttccattttgtgtctttaaaccg |
100 |
Q |
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| T |
31742086 |
agaaatatactgataaagggttactataattgagtatgaatcttaaccagcaaaaagacagtgcagagtacaaacctttccattttgtgtctttaaaccg |
31741987 |
T |
|
| Q |
101 |
cgcacgcaactggtacaattacaaggtaaccaaaacaagtcactgccggtatccaatgccaccaaaaaccataaaggtggtgtcccaaccgaaacattgg |
200 |
Q |
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| T |
31741986 |
cgcacgcaactggtacaattacaaggtaaccaaaacaagtcactgccggtatccaatgccaccaaaaaccatagaggtggtgtcccaaccgaaacattgg |
31741887 |
T |
|
| Q |
201 |
caaaatgcaaactgaaatccaaataaccaggataaattattaccacaacatcatacacaatattcactctagactcaagattcctaaaaatagatgacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31741886 |
caaaatgcaaactgaaatccaaataaccaggataaattattaccacaacatcatacacaatattcactctagactcaagattcctaaaaatagatgacca |
31741787 |
T |
|
| Q |
301 |
taaaaataaaagacatcccttttat |
325 |
Q |
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||||||||||||| ||||||||||| |
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| T |
31741786 |
taaaaataaaagatatcccttttat |
31741762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 9064090 - 9064202
Alignment:
| Q |
111 |
tggtacaattacaaggtaaccaaaacaagtcactgccggtatccaatgccaccaaaaaccataaaggtggtgtcccaaccgaaacattggcaaaatgcaa |
210 |
Q |
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| T |
9064090 |
tggtacaattgcaagggagccagaataagtcactcccagtatctaatgcaacaagatatgatgaagctggtgtcccaacagaaacatttgcaaaatgcaa |
9064189 |
T |
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| Q |
211 |
actgaaatccaaa |
223 |
Q |
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|||||||| |||| |
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| T |
9064190 |
actgaaatacaaa |
9064202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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