View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15922_low_12 (Length: 342)

Name: NF15922_low_12
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15922_low_12
NF15922_low_12
[»] chr1 (14 HSPs)
chr1 (134-323)||(46354209-46354394)
chr1 (1-126)||(8089725-8089856)
chr1 (1-126)||(10582776-10582907)
chr1 (1-126)||(10583982-10584113)
chr1 (1-126)||(49122204-49122335)
chr1 (1-126)||(8788539-8788670)
chr1 (1-106)||(49122015-49122126)
chr1 (1-126)||(49123338-49123469)
chr1 (1-103)||(23540999-23541109)
chr1 (20-70)||(3815217-3815267)
chr1 (20-70)||(36346608-36346658)
chr1 (20-69)||(19950406-19950455)
chr1 (20-82)||(40670590-40670651)
chr1 (26-70)||(17826227-17826271)
[»] chr7 (5 HSPs)
chr7 (133-326)||(3570837-3571026)
chr7 (1-126)||(6081277-6081408)
chr7 (1-126)||(6082484-6082615)
chr7 (20-125)||(17901154-17901267)
chr7 (10-125)||(27021349-27021468)
[»] chr5 (11 HSPs)
chr5 (133-326)||(38927780-38927969)
chr5 (1-126)||(22950339-22950470)
chr5 (1-126)||(39701594-39701725)
chr5 (2-126)||(19934633-19934763)
chr5 (128-326)||(43240589-43240785)
chr5 (1-126)||(39702824-39702955)
chr5 (1-126)||(29526044-29526176)
chr5 (1-126)||(29527257-29527389)
chr5 (1-70)||(41050996-41051065)
chr5 (28-125)||(19139374-19139477)
chr5 (20-70)||(35144568-35144618)
[»] chr3 (8 HSPs)
chr3 (1-126)||(7197792-7197923)
chr3 (2-126)||(48637544-48637674)
chr3 (1-126)||(54994685-54994816)
chr3 (1-126)||(592577-592708)
chr3 (1-126)||(45826158-45826289)
chr3 (1-111)||(51274462-51274578)
chr3 (27-126)||(40976891-40976996)
chr3 (1-66)||(2386372-2386437)
[»] scaffold0011 (2 HSPs)
scaffold0011 (1-126)||(205595-205726)
scaffold0011 (1-126)||(211672-211803)
[»] chr6 (7 HSPs)
chr6 (1-126)||(18131788-18131919)
chr6 (1-126)||(18132994-18133125)
chr6 (1-126)||(21535784-21535915)
chr6 (1-125)||(21395598-21395728)
chr6 (32-126)||(7033343-7033443)
chr6 (20-70)||(4303035-4303085)
chr6 (31-68)||(16189671-16189708)
[»] scaffold0227 (2 HSPs)
scaffold0227 (1-126)||(11152-11283)
scaffold0227 (1-126)||(12300-12431)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-126)||(80793-80924)
scaffold0026 (4-127)||(79600-79729)
[»] chr4 (4 HSPs)
chr4 (1-126)||(11962106-11962237)
chr4 (4-70)||(3567045-3567111)
chr4 (1-53)||(45638746-45638798)
chr4 (18-63)||(27869367-27869412)
[»] chr8 (6 HSPs)
chr8 (1-121)||(40254480-40254605)
chr8 (26-126)||(21661182-21661288)
chr8 (10-125)||(2411068-2411187)
chr8 (74-126)||(26246974-26247026)
chr8 (19-70)||(5176615-5176665)
chr8 (11-59)||(19729196-19729244)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-104)||(177891-178000)
[»] chr2 (4 HSPs)
chr2 (1-125)||(33789955-33790088)
chr2 (1-70)||(12324929-12324998)
chr2 (10-63)||(18955452-18955505)
chr2 (10-54)||(3302449-3302494)
[»] scaffold0063 (1 HSPs)
scaffold0063 (26-70)||(33903-33946)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 46354394 - 46354209
Alignment:
Q  134 aattttaattgataatcataaagttaagttttgctacgatagttatcagttaagaaaaatgtaaaactaataatacttcaaatatatttctatgaatttt 233  Q
    |||||||||||||||||||||||||||||| |||||||   |||||  | |||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  46354394 aattttaattgataatcataaagttaagttctgctacg---gttattgggtaagaaaaatgtaaaactaatagtacttcaaatatacttctatgaatttt 46354298  T
Q  234 attgccactataaactctgtgggttcaacatctaattttacttgcagaatttcggctatttatctctattgtcccatcattaattgttaa 323  Q
    |||||||||||||| |  ||| || ||| |||||||| ||||||||||||||| ||||||| ||||||||||  ||||||||||| ||||    
T  46354297 attgccactataaatttggtgtgtgcaatatctaattatacttgcagaatttcagctatttttctctattgt-acatcattaatttttaa 46354209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 8089856 - 8089725
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  8089856 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 8089757  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  8089756 cttactattagtttatattttgatatcagttc 8089725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 10582776 - 10582907
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  10582776 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattgtaat 10582875  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  10582876 cttactattagtttatattttgatatcagttc 10582907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 10583982 - 10584113
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  10583982 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattgtaat 10584081  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  10584082 cttactattagtttatattttgatatcagttc 10584113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 49122204 - 49122335
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  49122204 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 49122303  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||| ||||||||||    
T  49122304 cttactattagtttatattttcatatcagttc 49122335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 8788670 - 8788539
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  8788670 cagggattgggataaaggataggtagggagagaccaagctttcgaattcttggaggggagagaaccaagactctctaatttcttgggattatattgtaat 8788571  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
     ||||||||| | |||||||||||||||||||    
T  8788570 attactattagtttatattttgatatcagttc 8788539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 49122015 - 49122126
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  49122015 cagggattgggataaaggattggtagggagagatcaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggattatattgtaat 49122114  T
Q  95 cttactattaat 106  Q
    ||||||||||||    
T  49122115 cttactattaat 49122126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 49123338 - 49123469
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    ||||||||||| |||||||||||||||||||||    || |||||||||||||||||||||||||||||| ||      ||||||| |||||||| ||||    
T  49123338 cagggattggggtaaaggattggtagggagagattgggcactcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattctaat 49123437  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  49123438 cttactattagtttatattttgatatcagttc 49123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23541109 - 23540999
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcg--aatacttggaggggagagaaccaagaatc------ttcttggaattatattgta 92  Q
    ||||||||||||||| |||||||||||||||||||||||||| |  |||||||||| || ||| |||||||| ||      ||||||| |||||| ||||    
T  23541109 cagggattgggataatggattggtagggagagaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattatactgta 23541010  T
Q  93 atcttactatt 103  Q
    |||||||||||    
T  23541009 atcttactatt 23540999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 3815217 - 3815267
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  3815217 ttggaagggagagaccaagcactcgaattcttggaggggagagaaccaaga 3815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 36346658 - 36346608
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||| ||||||||| ||||||||||||| | ||||||||||||||||||||    
T  36346658 ttggaagggagagatcaagctctcgaattcatggaggggagagaaccaaga 36346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 19950455 - 19950406
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaag 69  Q
    |||| ||||| | ||||||||||||||| |||||||||||||||||||||    
T  19950455 ttgggagggaaaaaccaagctctcgaattcttggaggggagagaaccaag 19950406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 40670651 - 40670590
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatcttcttggaa 82  Q
    |||| |||||||| |||||||||| ||| |||||| |||||||||||| |||| |||||||||    
T  40670651 ttgggagggagaggccaagctctcaaattcttggacgggagagaaccatgaat-ttcttggaa 40670590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 17826271 - 17826227
Alignment:
Q  26 gggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||    
T  17826271 gggagagaccaagctctcgaattcttggagggaggagacccaaga 17826227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 133 - 326
Target Start/End: Complemental strand, 3571026 - 3570837
Alignment:
Q  133 gaattttaattgataatcataaagttaagttttgctacgatagttatcagttaagaaaaatgtaaaactaataatacttcaaatatatttctatgaattt 232  Q
    ||||||||||| ||||||||||||||||||| |||||||   |||||  | |||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  3571026 gaattttaattcataatcataaagttaagttctgctacg---gttattgggtaagaaaaatgtaaaactaatagtactccaaatatacttctatgaattt 3570930  T
Q  233 tattgccactataaactctgtgggttcaacatctaattttacttgcagaatttcggctatttatctctattgtcccatcattaattgttaagtc 326  Q
     ||||||||||||||||  ||| || ||| |||||||| ||||||||||||||||| ||||| ||||||||||  ||||||||||| |||||||    
T  3570929 cattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatttttctctattgt-acatcattaatttttaagtc 3570837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6081277 - 6081408
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  6081277 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattgtaat 6081376  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  6081377 cttactattagtttatattttgatatcagttc 6081408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6082484 - 6082615
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  6082484 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattgtaat 6082583  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  6082584 cttactattagtttatattttgatatcagttc 6082615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 17901154 - 17901267
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatcttactattaatctata-- 111  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||      ||||||| | | ||||||||| ||||||||||| ||||      
T  17901154 ttgggagggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttgggaatctattgtaatattactattaatttatatg 17901253  T
Q  112 ttttgatatcagtt 125  Q
    ||||||||||||||    
T  17901254 ttttgatatcagtt 17901267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 27021349 - 27021468
Alignment:
Q  10 ggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc----ttcttggaattatattgtaatcttactattaa 105  Q
    |||||||| | || |||||||||| ||||||||||||| |||| || |||| |||||| || ||    ||||||| ||| ||||||||| ||||||||||    
T  27021349 ggataaagaaatgttagggagagatcaagctctcgaattcttgaagaggagggaaccaggactcgaatttcttgggattctattgtaatattactattaa 27021448  T
Q  106 tctatattttgatatcagtt 125  Q
       |||||||||||||||||    
T  27021449 gtaatattttgatatcagtt 27021468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 133 - 326
Target Start/End: Complemental strand, 38927969 - 38927780
Alignment:
Q  133 gaattttaattgataatcataaagttaagttttgctacgatagttatcagttaagaaaaatgtaaaactaataatacttcaaatatatttctatgaattt 232  Q
    ||||||||||| ||||||||||||||||||| |||||||   |||||  | |||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  38927969 gaattttaattcataatcataaagttaagttctgctacg---gttattgggtaagaaaaatgtaaaactaatagtactccaaatatacttctatgaattt 38927873  T
Q  233 tattgccactataaactctgtgggttcaacatctaattttacttgcagaatttcggctatttatctctattgtcccatcattaattgttaagtc 326  Q
     ||||||||||||||||  ||| || ||| |||||||| ||||||||||||||||| ||||| ||||||||||  ||||||||||| |||||||    
T  38927872 cattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatttttctctattgt-acatcattaatttttaagtc 38927780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 22950339 - 22950470
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  22950339 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 22950438  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  22950439 cttactattagtttatattttgatatcagttc 22950470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 39701725 - 39701594
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  39701725 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 39701626  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  39701625 cttactattagtttatattttgatatcagttc 39701594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 19934633 - 19934763
Alignment:
Q  2 agggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||||||||||||||    
T  19934633 agggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttcttgggattatattgtaatc 19934732  T
Q  96 ttactattaatctatattttgatatcagttc 126  Q
    ||||||||| | |||||||||||||||||||    
T  19934733 ttactattagtttatattttgatatcagttc 19934763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 128 - 326
Target Start/End: Original strand, 43240589 - 43240785
Alignment:
Q  128 tttcagaattttaattgataatcataaagttaagttttgctacgatagttatcagttaagaaaaatgtaaaactaataatacttcaaatatatttctatg 227  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||||||| ||||  | || ||||| ||||||||||||| ||||  ||||||| ||||  |    
T  43240589 tttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--g 43240686  T
Q  228 aattttattgccactataaactctgtgggttcaacatctaattttacttgcagaatttcggctatttatctctattgtcccatcattaattgttaagtc 326  Q
    | | ||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||    
T  43240687 agtattattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtc 43240785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 39702955 - 39702824
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  39702955 cagggattgggataaaggatcggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 39702856  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  39702855 cttactattagtttatattttgatatcagttc 39702824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 29526176 - 29526044
Alignment:
Q  1 cagggattgggat-aaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaa 93  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||| ||||||||||||    
T  29526176 cagggattgggattaaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcggatttcttgggattatattgtaa 29526077  T
Q  94 tcttactattaatctatattttgatatcagttc 126  Q
    ||||||||||| | |||||||||||||||||||    
T  29526076 tcttactattagtttatattttgatatcagttc 29526044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 29527389 - 29527257
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttgga-ggggagagaaccaagaatc------ttcttggaattatattgtaa 93  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||      ||||||| ||||||||||||    
T  29527389 cagggattgggataaaggattggtagggagagaccaagctcttgaattcttggagggggagagaaccaagactctcgaatttcttgggattatattgtaa 29527290  T
Q  94 tcttactattaatctatattttgatatcagttc 126  Q
    ||||||||||| | |||||||||||||| ||||    
T  29527289 tcttactattagtttatattttgatatctgttc 29527257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41051065 - 41050996
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  41051065 cagggattgggataaaggataggtagggagagaccaagctcttgaattcttggaggggacagaaccaaga 41050996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 19139374 - 19139477
Alignment:
Q  28 gagagaccaagctctcgaatacttggaggggagagaaccaagaatct------tcttggaattatattgtaatcttactattaatctatattttgatatc 121  Q
    |||| ||||||||||| ||| |||||||||||||||||||||| |||      |||||| ||||||||||||||||||||||| | || |||||||||||    
T  19139374 gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttaaattttgatatc 19139473  T
Q  122 agtt 125  Q
    ||||    
T  19139474 agtt 19139477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 35144618 - 35144568
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  35144618 ttggaagggagagaccaaggtctcgaattcttggaggggagagaaccaaga 35144568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 7197792 - 7197923
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  7197792 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 7197891  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  7197892 cttactattagtttatattttgatatcagttc 7197923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 48637674 - 48637544
Alignment:
Q  2 agggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||||||||||||||    
T  48637674 agggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggattatattgtaatc 48637575  T
Q  96 ttactattaatctatattttgatatcagttc 126  Q
    ||||||||| | |||||||||||||||||||    
T  48637574 ttactattagtttatattttgatatcagttc 48637544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 54994685 - 54994816
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  54994685 cagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 54994784  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  54994785 cttactattagtttatattttgatatcagttc 54994816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 592577 - 592708
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga------atcttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||      |  ||||||| |||||||||||||    
T  592577 cagggattgggataaaggattggtagggagagcccaagctctcgaattcttggaggggagagaaccaagaccctcgaatttcttgggattatattgtaat 592676  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  592677 cttactattagtttatattttgatatcagttc 592708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 45826289 - 45826158
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  45826289 cagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctctaatttcttgggattatattgtaat 45826190  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
     ||||||||| | |||||||||||||||||||    
T  45826189 attactattagtttatattttgatatcagttc 45826158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 51274462 - 51274578
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||| ||      ||||||| |||||||||||||    
T  51274462 cagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggggagaaccaagactctcgaatttcttgggattatattgtaat 51274561  T
Q  95 cttactattaatctata 111  Q
     ||||||||||||||||    
T  51274562 attactattaatctata 51274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 40976891 - 40976996
Alignment:
Q  27 ggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatcttactattaatctatattttgatat 120  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||      || |||| ||||||||||||| ||||||||| | |||||||||||||    
T  40976891 ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaattttttgggattatattgtaatattactattagtttatattttgatat 40976990  T
Q  121 cagttc 126  Q
    ||||||    
T  40976991 cagttc 40976996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2386437 - 2386372
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaacc 66  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  2386437 cagggattgagataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaacc 2386372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 205726 - 205595
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  205726 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattgtaat 205627  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  205626 cttactattagtttatattttgatatcagttc 205595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 211803 - 211672
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  211803 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattgtaat 211704  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  211703 cttactattagtttatattttgatatcagttc 211672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 18131919 - 18131788
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||      ||||||| |||||||||||||    
T  18131919 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaagggagagaaccaagactctcgaatttcttgggattatattgtaat 18131820  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  18131819 cttactattagtttatattttgatatcagttc 18131788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 18133125 - 18132994
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  18133125 cagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 18133026  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  18133025 cttactattagtttatattttgatatcagttc 18132994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 21535784 - 21535915
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  21535784 cagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 21535883  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  21535884 cttactattagtttatattttgatatcagttc 21535915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 21395728 - 21395598
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||      ||||||| |||||||| ||||    
T  21395728 cagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagacaaccaagactcttgaatttcttgggattatattataat 21395629  T
Q  95 cttactattaatctatattttgatatcagtt 125  Q
    |||||| ||| | ||||||||||||||||||    
T  21395628 cttactgttagtttatattttgatatcagtt 21395598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 7033443 - 7033343
Alignment:
Q  32 gaccaagctctcgaatacttggaggggagagaaccaagaatct------tcttggaattatattgtaatcttactattaatctatattttgatatcagtt 125  Q
    ||||||||| |||||| |||||||||||||||||||||| |||      |||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  7033443 gaccaagctttcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagtt 7033344  T
Q  126 c 126  Q
    |    
T  7033343 c 7033343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 4303035 - 4303085
Alignment:
Q  20 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  4303035 ttggaagggagagaccaagctctcgaattcttggaggggagagaaccaaga 4303085  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 16189671 - 16189708
Alignment:
Q  31 agaccaagctctcgaatacttggaggggagagaaccaa 68  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  16189671 agaccaagctctcgaattcttggaggggagagaaccaa 16189708  T

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Target: scaffold0227 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 11152 - 11283
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||      ||||||| |||||||||||||    
T  11152 cagggattgggataaaggattggtagggagagaccaagctctcgaaaacttggaagggagagaaccaagactctcgaatttcttgggattatattgtaat 11251  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    |||||||||| | |||||||||||||||||||    
T  11252 cttactattagtttatattttgatatcagttc 11283  T

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Target: scaffold0227; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 12300 - 12431
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  12300 cagggattgggataaaggataggtagggagagaccaagctcttgaactcttggaggggagagaaccaagactctctaatttcttgggattatattgtaat 12399  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
     ||||||||| | ||||||||||||| |||||    
T  12400 attactattagtttatattttgatataagttc 12431  T

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Target: scaffold0026 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 80793 - 80924
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||      || |||| |||||||||||||    
T  80793 cagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttattgggattatattgtaat 80892  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
     ||||||||| | |||||||||||||||||||    
T  80893 attactattagtttatattttgatatcagttc 80924  T

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Target: scaffold0026; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 79600 - 79729
Alignment:
Q  4 ggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatctt 97  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||      ||||||| ||||||||||||| ||    
T  79600 ggattaggataaaggataggtacggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatatt 79699  T
Q  98 actattaatctatattttgatatcagttct 127  Q
    ||||||| | ||||||||||||||||||||    
T  79700 actattagtttatattttgatatcagttct 79729  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 11962106 - 11962237
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  11962106 caggcattggggtaaaggattggtagggatagaccaagctctcgaacacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 11962205  T
Q  95 cttactattaatctatattttgatatcagttc 126  Q
    || ||||||| | |||||||||||||||||||    
T  11962206 ctaactattagtttatattttgatatcagttc 11962237  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 3567045 - 3567111
Alignment:
Q  4 ggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    ||||||| ||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||    
T  3567045 ggattggaataaaggataggtagggagagaccaaactatcgaattcttggaggggagagaaccaaga 3567111  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45638798 - 45638746
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttgg 53  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  45638798 cagggattgggataaagggtaggtagggagagaccaagctctcgaattcttgg 45638746  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 27869367 - 27869412
Alignment:
Q  18 gattggtagggagagaccaagctctcgaatacttggaggggagaga 63  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||    
T  27869367 gattggtagggagagaccaagctcttgaattcttggaagggagaga 27869412  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 40254480 - 40254605
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||      ||||||| ||| |||||||||    
T  40254480 cagggattgggataaaggattggtagggagagaccaagctctc-aattcttggaggggagagaaccaagactctcgaatttcttgggattctattgtaat 40254578  T
Q  95 cttactattaatctatattttgatatc 121  Q
     ||||||||||| ||||||||||||||    
T  40254579 attactattaatttatattttgatatc 40254605  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 21661182 - 21661288
Alignment:
Q  26 gggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatcttactattaatctatattttgata 119  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||      ||||||| | ||||||||||||||||||||| | ||||||||||||    
T  21661182 gggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttgggaatatattgtaatcttactattagtttatattttgata 21661281  T
Q  120 tcagttc 126  Q
    |||||||    
T  21661282 tcagttc 21661288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 2411187 - 2411068
Alignment:
Q  10 ggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaatcttactatt 103  Q
    |||||||||||||||||||||||||||||  ||||||| | |||||||||||||| ||||| ||      ||||||| |||  |||||||| ||||||||    
T  2411187 ggataaaggattggtagggagagaccaag--ctcgaattcctggaggggagagaatcaagactctcaaatttcttgggattcgattgtaatattactatt 2411090  T
Q  104 aatctatattttgatatcagtt 125  Q
    | | ||||||||||||||||||    
T  2411089 agtttatattttgatatcagtt 2411068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 26247026 - 26246974
Alignment:
Q  74 ttcttggaattatattgtaatcttactattaatctatattttgatatcagttc 126  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  26247026 ttcttgggattatattgtaatcttactattagtttatattttgatatcagttc 26246974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5176665 - 5176615
Alignment:
Q  19 attggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||||| |||||||||||||||||||||| |||||| |||||||| ||||||    
T  5176665 attggttgggagagaccaagctctcgaattcttgga-gggagagacccaaga 5176615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 19729196 - 19729244
Alignment:
Q  11 gataaaggattggtagggagagaccaagctctcgaatacttggagggga 59  Q
    ||||||| |||| || ||||||||||||||||||||| |||||| ||||    
T  19729196 gataaagtattgttaaggagagaccaagctctcgaattcttggaaggga 19729244  T

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Target: scaffold0018 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 178000 - 177891
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaattatattgtaat 94  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||| |||||||||||||    
T  178000 cagggattggggtaaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 177901  T
Q  95 cttactatta 104  Q
    ||||| ||||    
T  177900 cttaccatta 177891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 33789955 - 33790088
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagaatc------ttcttggaat--tatattgta 92  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||      ||||||| ||  |||||||||    
T  33789955 cagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggagagaaccaagactctcgaatttcttgggattatatattgta 33790054  T
Q  93 at-cttactattaatctatattttgatatcagtt 125  Q
    ||  ||||||| ||| ||||||||||||||||||    
T  33790055 ataattactataaatttatattttgatatcagtt 33790088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12324929 - 12324998
Alignment:
Q  1 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  12324929 cagggattgcgataaaggattggtagggagagaccaaactctcgaatttttggaggggagagaaccaaga 12324998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 18955452 - 18955505
Alignment:
Q  10 ggataaaggattggtagggagagaccaagctctcgaatacttggaggggagaga 63  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||    
T  18955452 ggataaaggattggtagggagagaccaatctctctaattcttggaagggagaga 18955505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 3302449 - 3302494
Alignment:
Q  10 ggataaaggattggtagggagagaccaa-gctctcgaatacttgga 54  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||    
T  3302449 ggataaaggattggtagggagagaccaaggctcttgaattcttgga 3302494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 33903 - 33946
Alignment:
Q  26 gggagagaccaagctctcgaatacttggaggggagagaaccaaga 70  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||    
T  33903 gggagagaccaagctctcgaattcttgga-gggagagatccaaga 33946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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