View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15922_low_13 (Length: 269)
Name: NF15922_low_13
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3557967 - 3557712
Alignment:
| Q |
1 |
ttatcaaatatcaacacagcattgttcaaacgactccatttctttgttttcacatcaatgttctgtgctccaatagtgtttctgaattttgaaaaactct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557967 |
ttatcaaatatcaacacagcattgttcaaacgactccatttctttgttttcacatcaatgttctgtgctccaatagtgtttctgaattttgaaaaactct |
3557868 |
T |
|
| Q |
101 |
tcatgattattatatcagcatctatataaatgcctccaaatttatacaagagagaaagtctaagtaaatttgagaggttttggcctaatgaaatttcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557867 |
tcatgattattatatcagcatctatataaatgcctccaaatttatacaagagagaaagtctaagtaaatttgagaggttttggcctaatgaaatttcacc |
3557768 |
T |
|
| Q |
201 |
tggatttacgttcccttgtattaaacgattaaaccatgattctgcatgagtgtttt |
256 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3557767 |
tggatttacattcccttgtattaaacgattaaaccatgattctgcatgagtgtttt |
3557712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University