View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_14 (Length: 252)
Name: NF15922_low_14
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5181546 - 5181476
Alignment:
| Q |
1 |
ggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
71 |
Q |
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| T |
5181546 |
ggtatgggaatatgataaagatggcatttactcattgaagtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
20 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
71 |
Q |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
9 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
70 |
Q |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5159318 - 5159249
Alignment:
| Q |
1 |
ggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
70 |
Q |
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| T |
5159318 |
ggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaagagaaaatg |
5159249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
72 |
aaagagtattatgtggagagtgacaaaacatattttttc |
110 |
Q |
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| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
72 |
aaagagtattatgtggagagtgacaaaacatattt |
106 |
Q |
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| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 5172314 - 5172278
Alignment:
| Q |
205 |
ctatcttaggaaatacaaaagctcccgttcatttcac |
241 |
Q |
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| T |
5172314 |
ctatgttaggaaatacaaaagctccggttcatttcac |
5172278 |
T |
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