View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_2 (Length: 519)
Name: NF15922_low_2
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 38522847 - 38522347
Alignment:
| Q |
16 |
aatggacacatgcatgcatcactattttttataggcaaattattagtggttaatttgttaggaggatttggatttgttagtagcagggatcgagccctca |
115 |
Q |
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| T |
38522847 |
aatggacacatgcatgcatcactattttttataggcaaattattagtggttaatttgttagaaggatttggatttgttagtagcagggatcgagccctca |
38522748 |
T |
|
| Q |
116 |
acctattttatgatccttcgttagagcctggatcgagccctgtaacatatgttagctttgttctagttcttactatactgttttattaggatgtcatcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38522747 |
acctattttatgatccttcgttagagcctggatcgagccctgtaacatatgttagctttgttctagttcttactatactgttttattaggatgccatcaa |
38522648 |
T |
|
| Q |
216 |
caatatttggcctgatattttacttttactctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagc |
315 |
Q |
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| T |
38522647 |
caatatttggcctgatattttacttttactctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagc |
38522548 |
T |
|
| Q |
316 |
accaattcaggcaacaagtttactggttgttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccact |
415 |
Q |
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| T |
38522547 |
accaattcaggcaacaagtttactggttgttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccact |
38522448 |
T |
|
| Q |
416 |
gtatgtttcact--ctctttgtttcttatatagcaaatacatctctgaaatatgtaaaactgcttatcaatgtttttctccttttgtctgcagctgttca |
513 |
Q |
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| T |
38522447 |
gtatgtttcactctctctttgtttcttatatagcaaatacatctctgaaatatgtaaaactgtttatcaatgtttttctccttttgtctgcagctgttca |
38522348 |
T |
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| Q |
514 |
t |
514 |
Q |
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| |
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| T |
38522347 |
t |
38522347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 245 - 424
Target Start/End: Complemental strand, 43458293 - 43458114
Alignment:
| Q |
245 |
tctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagcaccaattcaggcaacaagtttactggttg |
344 |
Q |
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||||||||||||||||||||||| |||| ||| ||||| ||||||| || |||||||||||||| | |||||| |||||| ||||||||||| | | |
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| T |
43458293 |
tctgtgcagtatgtgcattttcttcagaggaaatattctattggatcatttaacttgttgggccacactgcaccagcacaggcagcaagtttactgctag |
43458194 |
T |
|
| Q |
345 |
ttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccactgtatgtttc |
424 |
Q |
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| ||||||||| | ||||||||| | |||| |||||||||||||| || ||||||| || |||||||||||| ||||| |
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| T |
43458193 |
taggcccctttatggactattggctgacaaacaaacgagttgatgcatatgactatggcttgacatccactgtaagtttc |
43458114 |
T |
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